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The map label for this gene is tnp904 [H]

Identifier: 125624944

GI number: 125624944

Start: 2142477

End: 2143238

Strand: Direct

Name: tnp904 [H]

Synonym: llmg_2174

Alternate gene names: 125624944

Gene position: 2142477-2143238 (Clockwise)

Preceding gene: 125624943

Following gene: 125624964

Centisome position: 84.7

GC content: 38.71

Gene sequence:

>762_bases
ATGCATCGTCGTCCTTCAAAACAACAAGTGGAGAGAGAAATTCTCTCAGAGAAGATAAAAGCTGTCTTTCATGAGCATAA
GGGACGCTATGGTGCGGTTAGAATTACCAAGGTACTTCATAATACTGGTATTATGACCAACACGAAACGTGTTGGGAAAC
TGATGCACTTGATGGGACTTTATGCCAAGGGAAGCCGTTATAAATATAAACATTACAACAGAAAAGGAGCTTCGCTTTCA
AGACCCAATTTAATTAATCAGATCTTTAAAGCAACAGCTCCTAATAAAGTATGGCTGGGAGACATGACCTATATCCCTAC
CAAAGAAGGCACCTTATACTTAGCCGTGAATATCGACGTTTTTTCACGTAAGATTGTAGGCTGGTCAATGTCTTCACGGA
TGCAAGATAAACTGGTGAGGGATTGCTTCTTACAAGCTTGTGGGAAAGAACATCCTCAGCCTGGCTTGATTGTCCATACT
GATCAAGGGAGTCAATATACAAGCTATCGTTATCAATCTACTCTTCGTCAAGTCGGTGCTCAATCTAGCATGAGTCGTAA
AGGAAATCCCTATGACAATGCATTGATGGAGTCTTTTTATAAGACGCTAAAGAGAGAGCTTATTAATGATGCTCATTTTG
AGACAAGAGCTGAGGCTACTCAAGAAATATTTAAATACATTGAGACCTATTACAATACAAAAAGGATGCATTCAGGTCTT
GATTACAAGTCTCCAAAAGACTTTGAAAAATATAATTCTTAA

Upstream 100 bases:

>100_bases
AGTAAAACGTTTTGAATTTCTCTTGAAACATCATGGGAAGATAAAAATTAAGCATGCAGTAAAAGTTCTTAAGGTTTCTC
GCTCAGGTTTCTATGAATAC

Downstream 100 bases:

>100_bases
ATTCTCTTAACTCCGTGTCTAGTTTTTCGTTGACTTTCCAAAATACTTGGATTTTTTTATTTGTTCTTGAAACTCTTCCG
ATATTCAATCGGAGACAACC

Product: transposase for insertion sequence element IS904I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MHRRPSKQQVEREILSEKIKAVFHEHKGRYGAVRITKVLHNTGIMTNTKRVGKLMHLMGLYAKGSRYKYKHYNRKGASLS
RPNLINQIFKATAPNKVWLGDMTYIPTKEGTLYLAVNIDVFSRKIVGWSMSSRMQDKLVRDCFLQACGKEHPQPGLIVHT
DQGSQYTSYRYQSTLRQVGAQSSMSRKGNPYDNALMESFYKTLKRELINDAHFETRAEATQEIFKYIETYYNTKRMHSGL
DYKSPKDFEKYNS

Sequences:

>Translated_253_residues
MHRRPSKQQVEREILSEKIKAVFHEHKGRYGAVRITKVLHNTGIMTNTKRVGKLMHLMGLYAKGSRYKYKHYNRKGASLS
RPNLINQIFKATAPNKVWLGDMTYIPTKEGTLYLAVNIDVFSRKIVGWSMSSRMQDKLVRDCFLQACGKEHPQPGLIVHT
DQGSQYTSYRYQSTLRQVGAQSSMSRKGNPYDNALMESFYKTLKRELINDAHFETRAEATQEIFKYIETYYNTKRMHSGL
DYKSPKDFEKYNS
>Mature_253_residues
MHRRPSKQQVEREILSEKIKAVFHEHKGRYGAVRITKVLHNTGIMTNTKRVGKLMHLMGLYAKGSRYKYKHYNRKGASLS
RPNLINQIFKATAPNKVWLGDMTYIPTKEGTLYLAVNIDVFSRKIVGWSMSSRMQDKLVRDCFLQACGKEHPQPGLIVHT
DQGSQYTSYRYQSTLRQVGAQSSMSRKGNPYDNALMESFYKTLKRELINDAHFETRAEATQEIFKYIETYYNTKRMHSGL
DYKSPKDFEKYNS

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=219, Percent_Identity=35.1598173515982, Blast_Score=126, Evalue=2e-29,
Organism=Escherichia coli, GI1788405, Length=250, Percent_Identity=42.4, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI1787263, Length=250, Percent_Identity=42.4, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI1786753, Length=250, Percent_Identity=42.4, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI1786570, Length=250, Percent_Identity=42.4, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI1786490, Length=250, Percent_Identity=42.4, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI1789981, Length=234, Percent_Identity=36.3247863247863, Blast_Score=152, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 29452; Mature: 29452

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCHHHCCC
>Mature Secondary Structure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CCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1482189; 11337471; 1482192 [H]