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The map label for this gene is ylmE [H]

Identifier: 125624831

GI number: 125624831

Start: 2041527

End: 2042204

Strand: Reverse

Name: ylmE [H]

Synonym: llmg_2059

Alternate gene names: 125624831

Gene position: 2042204-2041527 (Counterclockwise)

Preceding gene: 125624832

Following gene: 125624830

Centisome position: 80.74

GC content: 32.45

Gene sequence:

>678_bases
ATGACGATTAAAGAGAATGTTAAAAGAATACTGAATAATGTGGATGCAGCAAAAGCTGCGTCTTCTTATTCTAATCAGTC
AGTTTCAGTCGTTGCTGTAACAAAATCTGTTGAAGCTAATCTTGCACGCGAAGTATTTGAAAATGGAATTTCACATTTGG
CAGAAAATCGGACAGAACTTTTTCTAGAAAAATATGAAGCTCTAAAAGATTGTGAGATTACTTGGCATCTAATTGGTAAT
TTACAAAGACGTAAAGTTAAAAAAGTTATTAATTATGTTGATTATTTTCATGCATTAGATTCTTTGAAATTAGCGCAGGA
AATAAGTAAGCGAGCTGAGCATCTCATTAAGTGTTTTATCGAAGTTAATATTTCTGGTGAAGAAAGTAAACATGGTTTTT
CTGTGGATGAGCTTAAGGAAACTTTAGCTGATTTCTCTGAGTTAGAAAATATTGAAATTGTTGGATTAATGACAATGGCT
CCGTTTGATGCGACTGAAAGCGAATGTAATGACATTTTCGGACGAATGAAAGAATTACAAGTTGAAATTTCTGAAATGAA
TCTTCCAAAAATTCCCTGCATAGAATTAAGCATGGGAATGAGTCGGGATTATGAAATTGCCATTAAAAATGGAGCAACTT
TTGTTCGAATCGGCACAGAATTTTTTAAAGATTTATAA

Upstream 100 bases:

>100_bases
TAAGTAACACACGCGATACTTCTTCAGTAACAAGTTTTGGTGGAGTACCAACTACAGATGAAGACCTTGATACACCACCA
TTCTTCCGTAAAATTAATCT

Downstream 100 bases:

>100_bases
GCTTAAAGATTAACGTAAACAACGGAGGAAAATATGGCATTTAAAGATTGGATGAATAATCTACGAGATTATTTTGTAGA
GGATGATGAAGAGTTCAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTIKENVKRILNNVDAAKAASSYSNQSVSVVAVTKSVEANLAREVFENGISHLAENRTELFLEKYEALKDCEITWHLIGN
LQRRKVKKVINYVDYFHALDSLKLAQEISKRAEHLIKCFIEVNISGEESKHGFSVDELKETLADFSELENIEIVGLMTMA
PFDATESECNDIFGRMKELQVEISEMNLPKIPCIELSMGMSRDYEIAIKNGATFVRIGTEFFKDL

Sequences:

>Translated_225_residues
MTIKENVKRILNNVDAAKAASSYSNQSVSVVAVTKSVEANLAREVFENGISHLAENRTELFLEKYEALKDCEITWHLIGN
LQRRKVKKVINYVDYFHALDSLKLAQEISKRAEHLIKCFIEVNISGEESKHGFSVDELKETLADFSELENIEIVGLMTMA
PFDATESECNDIFGRMKELQVEISEMNLPKIPCIELSMGMSRDYEIAIKNGATFVRIGTEFFKDL
>Mature_224_residues
TIKENVKRILNNVDAAKAASSYSNQSVSVVAVTKSVEANLAREVFENGISHLAENRTELFLEKYEALKDCEITWHLIGNL
QRRKVKKVINYVDYFHALDSLKLAQEISKRAEHLIKCFIEVNISGEESKHGFSVDELKETLADFSELENIEIVGLMTMAP
FDATESECNDIFGRMKELQVEISEMNLPKIPCIELSMGMSRDYEIAIKNGATFVRIGTEFFKDL

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=207, Percent_Identity=35.2657004830918, Blast_Score=105, Evalue=4e-23,
Organism=Escherichia coli, GI1789321, Length=227, Percent_Identity=31.7180616740088, Blast_Score=109, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17533025, Length=237, Percent_Identity=30.8016877637131, Blast_Score=97, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6319435, Length=234, Percent_Identity=29.4871794871795, Blast_Score=82, Evalue=9e-17,
Organism=Drosophila melanogaster, GI45550861, Length=240, Percent_Identity=29.1666666666667, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25519; Mature: 25387

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKENVKRILNNVDAAKAASSYSNQSVSVVAVTKSVEANLAREVFENGISHLAENRTEL
CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
FLEKYEALKDCEITWHLIGNLQRRKVKKVINYVDYFHALDSLKLAQEISKRAEHLIKCFI
HHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVNISGEESKHGFSVDELKETLADFSELENIEIVGLMTMAPFDATESECNDIFGRMKELQ
HEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
VEISEMNLPKIPCIELSMGMSRDYEIAIKNGATFVRIGTEFFKDL
HHHHHCCCCCCCEEEECCCCCCCEEEEEECCCEEEEECHHHHHCC
>Mature Secondary Structure 
TIKENVKRILNNVDAAKAASSYSNQSVSVVAVTKSVEANLAREVFENGISHLAENRTEL
CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
FLEKYEALKDCEITWHLIGNLQRRKVKKVINYVDYFHALDSLKLAQEISKRAEHLIKCFI
HHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVNISGEESKHGFSVDELKETLADFSELENIEIVGLMTMAPFDATESECNDIFGRMKELQ
HEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
VEISEMNLPKIPCIELSMGMSRDYEIAIKNGATFVRIGTEFFKDL
HHHHHCCCCCCCEEEECCCCCCCEEEEEECCCEEEEECHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]