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The map label for this gene is pepF [H]

Identifier: 125624692

GI number: 125624692

Start: 1887686

End: 1889491

Strand: Reverse

Name: pepF [H]

Synonym: llmg_1909

Alternate gene names: 125624692

Gene position: 1889491-1887686 (Counterclockwise)

Preceding gene: 125624693

Following gene: 125624691

Centisome position: 74.7

GC content: 33.89

Gene sequence:

>1806_bases
ATGGTAAAAAATAGAAATGAAATCCCTGAAGCCTTGACTTGGGATTTGACAACAATTTTTTCAACAGATCAAAAATGGGA
AACAGAATTAGAGAAGGTAAAAAAAGAGCTTTCACTTGTTGAGACAAATGATAAAGGTCATTTACTTGATTCAGCAGAAA
CTTTACTGACAATTACTAAAAATATGCTATCAATTTCTCAAAAAGTTGAAAAGCTTTATGTTTATGCTTCAATGAAAAAT
GATCAAGATACAAGAGAAGCAAAGTATCAAGAATATCAATCAAAAGCAACGGCCCTCTATGTTAATTTTGGGGAAAGCTA
TGCCTTTTATGAACCTGAATTTTTAAAAATTACAAAAGAAACCTACGAAAAATGGTTAGAAACCCTTCAGGAATTGAAAA
ATTACGATCACATGTTTGAACGTTTATTTGCTAAAAAAGAACATATCCTTAGTCAAAAAGAAGAAAAAATATTGGCGGCA
GCGGGTGAAATCTTTGAAAGTCCTTCGGAGACTTTTGAAATTTTCGATAATGCAGATGTTAAATTTCCTTTTGTTAAAAA
TGAATTGGGTGAAAAGATTCAGTTGACACATGGAAATTATAGCTCTCTTATGGAAAGTAAAAACAGGGAAGTAAGAAAAG
CGGCTTATGAAGCACTTTACAGCAATTATGAACAATATCAACATACCTATGCAAAAACTTTGCAGACCAATGTAAAAGTT
CATAATTTCAATGCCCAAATACGCGCATATGACTCAGCACGTCAGGCAGCTTTGATGAGTAATTTTGTTCCAGAAAAAGT
TTATGACGTCTTGATAGAAGGCATTCATCAACACTTACCACTTTTACATCGCTATATTGAATTACGTAAGAAAATCTTAG
AAATTTCTGATTTCAAAATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTCAATTACACTGAAGGAGTT
AAGAAAGCGCAAGAAGTGCTTGCAATTTTTGGTGAAGAGTATAGTCAGAAAGTTAAAGCGGCTTTTGATGAACGTTGGAT
TGATGTTGAAGAAAATGTCGGGAAACGGTCAGGGGCATACTCAGGTGGTTCTTATGATACCAAGGCATTCATGTTACTCA
ATTGGCAAGGAACATTGGACGATCTTTTTACATTGGTTCATGAGATGGGGCATTCTATTCACAGCACTTTTACGAGGGAA
AATCAGCCTTATGTTTATGGGGATTACCCAATCTTCTTAGCAGAGATTGCTTCAACTACCAATGAAAATATTTTAACTGA
GACTTTGCTCAAAGAAAGTAATGATGAAAAGGAACGTTTTGCTCTTTTAAACCATTGGTTAGATAGTTTTCGAGGAACCG
TATTTCGTCAAAGTCAATTTGCTGAATTTGAACAAAAAATTCACGAAGTCGATGCTGAAGGTGAAGTGTTGACGAGCGAA
TTTTTGAATTCTCTTTATGGCGAACTTAATGAAAAATATTATGGCTTATCTGCCAAAGAAAACCCTGAAATTCAGTTTGA
ATGGGCAAAAATTCCTCATTTCTATTATAATTTTTACGTTTTTCAATATGCAACTGGCTTTGCCGCAGCCTCATTTCTAG
CTGAAAAAGTGGTGCATGGTTCGGTTACTGACCGTCAAAATTATCTTGATTATTTAAAAGCTGGTTCGTCAGCCTACCCA
CTAGACGTGATTGCAAAAGCTGGAGTCAATATGGAATCTACAGATTACTTAGAGTCTGCTTTTAAGCTTTTTGAAAAACG
TTTGAATGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Upstream 100 bases:

>100_bases
TGGGAAAGCAGAAGAAGGAAAAATAATAGGATTTTATTATTTTATTTTATTCTCATTATTATAAGAAATAAGAGTTTTAA
GCTAAAAAGGAGTACCAATT

Downstream 100 bases:

>100_bases
AAATGGTTGAAACATATAAGAGCACAAGTAACCCCATGATGAATCGACCAGTTGTCAAAGCCGAGTTAGTCGAATGGATG
CGTTCAAGTCAAACACAAGT

Product: PepF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 601

Protein sequence:

>601_residues
MVKNRNEIPEALTWDLTTIFSTDQKWETELEKVKKELSLVETNDKGHLLDSAETLLTITKNMLSISQKVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKETYEKWLETLQELKNYDHMFERLFAKKEHILSQKEEKILAA
AGEIFESPSETFEIFDNADVKFPFVKNELGEKIQLTHGNYSSLMESKNREVRKAAYEALYSNYEQYQHTYAKTLQTNVKV
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILEISDFKMYDIYTPLSNLDYKFNYTEGV
KKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAYSGGSYDTKAFMLLNWQGTLDDLFTLVHEMGHSIHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
FLNSLYGELNEKYYGLSAKENPEIQFEWAKIPHFYYNFYVFQYATGFAAASFLAEKVVHGSVTDRQNYLDYLKAGSSAYP
LDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVHL

Sequences:

>Translated_601_residues
MVKNRNEIPEALTWDLTTIFSTDQKWETELEKVKKELSLVETNDKGHLLDSAETLLTITKNMLSISQKVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKETYEKWLETLQELKNYDHMFERLFAKKEHILSQKEEKILAA
AGEIFESPSETFEIFDNADVKFPFVKNELGEKIQLTHGNYSSLMESKNREVRKAAYEALYSNYEQYQHTYAKTLQTNVKV
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILEISDFKMYDIYTPLSNLDYKFNYTEGV
KKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAYSGGSYDTKAFMLLNWQGTLDDLFTLVHEMGHSIHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
FLNSLYGELNEKYYGLSAKENPEIQFEWAKIPHFYYNFYVFQYATGFAAASFLAEKVVHGSVTDRQNYLDYLKAGSSAYP
LDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVHL
>Mature_601_residues
MVKNRNEIPEALTWDLTTIFSTDQKWETELEKVKKELSLVETNDKGHLLDSAETLLTITKNMLSISQKVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKETYEKWLETLQELKNYDHMFERLFAKKEHILSQKEEKILAA
AGEIFESPSETFEIFDNADVKFPFVKNELGEKIQLTHGNYSSLMESKNREVRKAAYEALYSNYEQYQHTYAKTLQTNVKV
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILEISDFKMYDIYTPLSNLDYKFNYTEGV
KKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAYSGGSYDTKAFMLLNWQGTLDDLFTLVHEMGHSIHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
FLNSLYGELNEKYYGLSAKENPEIQFEWAKIPHFYYNFYVFQYATGFAAASFLAEKVVHGSVTDRQNYLDYLKAGSSAYP
LDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVHL

Specific function: Hydrolyzes peptides containing between 7 and 17 amino acids with a rather wide specificity [H]

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 70055; Mature: 70055

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKNRNEIPEALTWDLTTIFSTDQKWETELEKVKKELSLVETNDKGHLLDSAETLLTITK
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHH
NMLSISQKVEKLYVYASMKNDQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKE
HHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH
TYEKWLETLQELKNYDHMFERLFAKKEHILSQKEEKILAAAGEIFESPSETFEIFDNADV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC
KFPFVKNELGEKIQLTHGNYSSLMESKNREVRKAAYEALYSNYEQYQHTYAKTLQTNVKV
CCCCHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILEISDFKM
EECCCEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
YDIYTPLSNLDYKFNYTEGVKKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAY
EEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCC
SGGSYDTKAFMLLNWQGTLDDLFTLVHEMGHSIHSTFTRENQPYVYGDYPIFLAEIASTT
CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCC
NENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
FLNSLYGELNEKYYGLSAKENPEIQFEWAKIPHFYYNFYVFQYATGFAAASFLAEKVVHG
HHHHHHHHHCHHEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SVTDRQNYLDYLKAGSSAYPLDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVH
CCCCHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
L
C
>Mature Secondary Structure
MVKNRNEIPEALTWDLTTIFSTDQKWETELEKVKKELSLVETNDKGHLLDSAETLLTITK
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHH
NMLSISQKVEKLYVYASMKNDQDTREAKYQEYQSKATALYVNFGESYAFYEPEFLKITKE
HHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH
TYEKWLETLQELKNYDHMFERLFAKKEHILSQKEEKILAAAGEIFESPSETFEIFDNADV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC
KFPFVKNELGEKIQLTHGNYSSLMESKNREVRKAAYEALYSNYEQYQHTYAKTLQTNVKV
CCCCHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
HNFNAQIRAYDSARQAALMSNFVPEKVYDVLIEGIHQHLPLLHRYIELRKKILEISDFKM
EECCCEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
YDIYTPLSNLDYKFNYTEGVKKAQEVLAIFGEEYSQKVKAAFDERWIDVEENVGKRSGAY
EEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCC
SGGSYDTKAFMLLNWQGTLDDLFTLVHEMGHSIHSTFTRENQPYVYGDYPIFLAEIASTT
CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCC
NENILTETLLKESNDEKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEVDAEGEVLTSE
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH
FLNSLYGELNEKYYGLSAKENPEIQFEWAKIPHFYYNFYVFQYATGFAAASFLAEKVVHG
HHHHHHHHHCHHEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SVTDRQNYLDYLKAGSSAYPLDVIAKAGVNMESTDYLESAFKLFEKRLNELEKLVEKGVH
CCCCHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9209029 [H]