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The map label for this gene is yabF [H]

Identifier: 125624668

GI number: 125624668

Start: 1865644

End: 1866204

Strand: Reverse

Name: yabF [H]

Synonym: llmg_1883

Alternate gene names: 125624668

Gene position: 1866204-1865644 (Counterclockwise)

Preceding gene: 125624669

Following gene: 125624667

Centisome position: 73.78

GC content: 35.65

Gene sequence:

>561_bases
ATGATAGAAAAACCAAAAATTAATGAAGTGATTGTGGTGGAAGGGCGAGATGATACGGCAAATCTTAAACATTATTTTGA
CTGCGATACCTATGAAACAGGGGGATCTTCTATTGATGACAGAGATTTAGAACGTTTGAAAGTACTTGAAGAAAAACGGG
GGATTATTGTATTTACTGACCCAGATTTTCAAGGAGAACGGATTCGAAAAATTATCATGAAAGCAATCCCGCAAGCAGGT
CATGCATTTCTAAATCGTGATGAAGCAAAACCCAAAGGAAAAGGGTCACTTGGTGTTGAACATGCAAATTTTGCGGCACT
CAATCAAGCTTTGTCAGAGGTTTTTGGTGAAAAATCATCACTGACAGATTCGTCAGCAGATTTGACCCAAACTGATTTAA
TGAGATTTGGTTTAATTATGGCTGCTGACAGTAGAAAGCGTCGAGAATTTCTATGTGAACAATTAAGGATTGGCTATGCT
AATGGCAAACAAATTAAGAAACGACTTAATATGTTTAAAATTACAATAGAACAGATTGAAAAAGTAATGAAAAATTACTG
A

Upstream 100 bases:

>100_bases
GAATTTCCTCAAATTGAGCAAAAAATAAGTGAATTTGCTGTTTGGGACAAAGTTAATATCCTTAAAAATCGGAAAGATAA
AGAGAAGTATTTAATAAAAT

Downstream 100 bases:

>100_bases
TGAAAATAACCATTTAAAGAAACAAAATACGATTATTAAGGCTGAACCTTAAATTAGTCAATTATAGATTACTTTCATTT
CTAGACAGATTTGTCAGTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MIEKPKINEVIVVEGRDDTANLKHYFDCDTYETGGSSIDDRDLERLKVLEEKRGIIVFTDPDFQGERIRKIIMKAIPQAG
HAFLNRDEAKPKGKGSLGVEHANFAALNQALSEVFGEKSSLTDSSADLTQTDLMRFGLIMAADSRKRREFLCEQLRIGYA
NGKQIKKRLNMFKITIEQIEKVMKNY

Sequences:

>Translated_186_residues
MIEKPKINEVIVVEGRDDTANLKHYFDCDTYETGGSSIDDRDLERLKVLEEKRGIIVFTDPDFQGERIRKIIMKAIPQAG
HAFLNRDEAKPKGKGSLGVEHANFAALNQALSEVFGEKSSLTDSSADLTQTDLMRFGLIMAADSRKRREFLCEQLRIGYA
NGKQIKKRLNMFKITIEQIEKVMKNY
>Mature_186_residues
MIEKPKINEVIVVEGRDDTANLKHYFDCDTYETGGSSIDDRDLERLKVLEEKRGIIVFTDPDFQGERIRKIIMKAIPQAG
HAFLNRDEAKPKGKGSLGVEHANFAALNQALSEVFGEKSSLTDSSADLTQTDLMRFGLIMAADSRKRREFLCEQLRIGYA
NGKQIKKRLNMFKITIEQIEKVMKNY

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 21173; Mature: 21173

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEKPKINEVIVVEGRDDTANLKHYFDCDTYETGGSSIDDRDLERLKVLEEKRGIIVFTD
CCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC
PDFQGERIRKIIMKAIPQAGHAFLNRDEAKPKGKGSLGVEHANFAALNQALSEVFGEKSS
CCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
LTDSSADLTQTDLMRFGLIMAADSRKRREFLCEQLRIGYANGKQIKKRLNMFKITIEQIE
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
KVMKNY
HHHHCC
>Mature Secondary Structure
MIEKPKINEVIVVEGRDDTANLKHYFDCDTYETGGSSIDDRDLERLKVLEEKRGIIVFTD
CCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEC
PDFQGERIRKIIMKAIPQAGHAFLNRDEAKPKGKGSLGVEHANFAALNQALSEVFGEKSS
CCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
LTDSSADLTQTDLMRFGLIMAADSRKRREFLCEQLRIGYANGKQIKKRLNMFKITIEQIE
CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
KVMKNY
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]