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The map label for this gene is yidA [C]

Identifier: 125624446

GI number: 125624446

Start: 1624680

End: 1625486

Strand: Reverse

Name: yidA [C]

Synonym: llmg_1647

Alternate gene names: 125624446

Gene position: 1625486-1624680 (Counterclockwise)

Preceding gene: 125624447

Following gene: 125624445

Centisome position: 64.26

GC content: 35.69

Gene sequence:

>807_bases
ATGGAAAAAATATTAGAAAAAGCCCAAAAGATTAAAATTATCTTTTTTGATATTGATGATACTTTAAGGGTTAAAGATTC
AGGATTTATGCCTGAATCAATCAATGAAGTGTTTAAAAAACTTCATGAAAAAGGAATCATGACCGGAATTGCAACGGGAA
GAAATCTTTTTGGTGTTGTTCCAGAAGTTCGTGCCTTGAAACCTGATTATTACGTGGCCATTAATGGCGCTTATGTTGAA
AATGCGTGCACTCAAAAAGTTTTATATAAAAATACTTTTTCCAAAGATTTAGTAGAGGAAATCATTGCTTGGTTGAGAAC
CGAACAAAGTGAGTATTCATTTGTGGCAGCTGACAGCTTACGCGTTTCAAAATGGGATAAAATCGCAAGTGAGGCGATTG
GTCCAGTTTATGCTGAACTGAAAGAAAATCCTGATTATTATCAAACAGAAGAAATTTATCAAATGTTGACGATTTCGGAT
CATGATGATCAGTTGAAGTTACCAGAAAACTTGGCTGACAAAATTCGGCTTGTACGTTGGCATCCAAATAGTTCAGATAT
TGTACCGCTTGAAGGCTCAAAAGCAATTGGCTGTCAACAAGTCTTGCAAGAACTTGGTTTGAAAGCTGAAAATATGCTGA
ATTTTGGCGATGGCCTCAATGACCGTGAACTTTTTGATTTTGCTGGCTTGTCAGTTGCGATGAAAGTTTCTCATCCAGAA
CTTTTGGAAAAAGCTGATTATATTACGGATTCGGTCGAAAATGATGGAATCTTAAAAGCCCTACAAGCCTTAAAAATTAT
TGATTGA

Upstream 100 bases:

>100_bases
ATTTATGCCATTCAACATCATTTAGTATAAACTTGAGGAAAAACAAGTTGGAAATATGATATAATTGAGAATGTGCAAAT
AAATTTAGAGTGAAAAATAA

Downstream 100 bases:

>100_bases
CAAATCTGTCAGTAAAAAATAAAACTGACAGATTCGTCAGTAACTTAAACTATGAAGAAAGGAAGGCATTTTTTAAATAG
AATGCCGACTAAAAAATTAT

Product: putative hydrolase

Products: NA

Alternate protein names: Phosphatase; Peptidyl-prolyl cis-trans isomerase; PPIase; Rotamase [H]

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MEKILEKAQKIKIIFFDIDDTLRVKDSGFMPESINEVFKKLHEKGIMTGIATGRNLFGVVPEVRALKPDYYVAINGAYVE
NACTQKVLYKNTFSKDLVEEIIAWLRTEQSEYSFVAADSLRVSKWDKIASEAIGPVYAELKENPDYYQTEEIYQMLTISD
HDDQLKLPENLADKIRLVRWHPNSSDIVPLEGSKAIGCQQVLQELGLKAENMLNFGDGLNDRELFDFAGLSVAMKVSHPE
LLEKADYITDSVENDGILKALQALKIID

Sequences:

>Translated_268_residues
MEKILEKAQKIKIIFFDIDDTLRVKDSGFMPESINEVFKKLHEKGIMTGIATGRNLFGVVPEVRALKPDYYVAINGAYVE
NACTQKVLYKNTFSKDLVEEIIAWLRTEQSEYSFVAADSLRVSKWDKIASEAIGPVYAELKENPDYYQTEEIYQMLTISD
HDDQLKLPENLADKIRLVRWHPNSSDIVPLEGSKAIGCQQVLQELGLKAENMLNFGDGLNDRELFDFAGLSVAMKVSHPE
LLEKADYITDSVENDGILKALQALKIID
>Mature_268_residues
MEKILEKAQKIKIIFFDIDDTLRVKDSGFMPESINEVFKKLHEKGIMTGIATGRNLFGVVPEVRALKPDYYVAINGAYVE
NACTQKVLYKNTFSKDLVEEIIAWLRTEQSEYSFVAADSLRVSKWDKIASEAIGPVYAELKENPDYYQTEEIYQMLTISD
HDDQLKLPENLADKIRLVRWHPNSSDIVPLEGSKAIGCQQVLQELGLKAENMLNFGDGLNDRELFDFAGLSVAMKVSHPE
LLEKADYITDSVENDGILKALQALKIID

Specific function: PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides [H]

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase cyclophilin-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015891
- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006379
- InterPro:   IPR000150
- InterPro:   IPR002130 [H]

Pfam domain/function: PF08282 Hydrolase_3; PF00160 Pro_isomerase [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 30339; Mature: 30339

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS01229 COF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKILEKAQKIKIIFFDIDDTLRVKDSGFMPESINEVFKKLHEKGIMTGIATGRNLFGVV
CHHHHHHHHEEEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHCCC
PEVRALKPDYYVAINGAYVENACTQKVLYKNTFSKDLVEEIIAWLRTEQSEYSFVAADSL
CHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCC
RVSKWDKIASEAIGPVYAELKENPDYYQTEEIYQMLTISDHDDQLKLPENLADKIRLVRW
CHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCEEEEEE
HPNSSDIVPLEGSKAIGCQQVLQELGLKAENMLNFGDGLNDRELFDFAGLSVAMKVSHPE
CCCCCCEEECCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHCCCEEEEEECCHH
LLEKADYITDSVENDGILKALQALKIID
HHHHHHHHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MEKILEKAQKIKIIFFDIDDTLRVKDSGFMPESINEVFKKLHEKGIMTGIATGRNLFGVV
CHHHHHHHHEEEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHCCC
PEVRALKPDYYVAINGAYVENACTQKVLYKNTFSKDLVEEIIAWLRTEQSEYSFVAADSL
CHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCC
RVSKWDKIASEAIGPVYAELKENPDYYQTEEIYQMLTISDHDDQLKLPENLADKIRLVRW
CHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCEEEEEE
HPNSSDIVPLEGSKAIGCQQVLQELGLKAENMLNFGDGLNDRELFDFAGLSVAMKVSHPE
CCCCCCEEECCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHCCCEEEEEECCHH
LLEKADYITDSVENDGILKALQALKIID
HHHHHHHHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA