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The map label for this gene is cspD [H]

Identifier: 125624081

GI number: 125624081

Start: 1227378

End: 1227578

Strand: Direct

Name: cspD [H]

Synonym: llmg_1256

Alternate gene names: 125624081

Gene position: 1227378-1227578 (Clockwise)

Preceding gene: 125624080

Following gene: 125624082

Centisome position: 48.52

GC content: 36.32

Gene sequence:

>201_bases
ATGGCAAATGGAACAGTAAAATGGTTTAACGCTACTAAAGGATTTGGTTTTATTACTTCTGAAGATGGTCAAGATTTGTT
CGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGACGAAGGTCAAAAAGTTGAATTTGATGTTGAAGAAG
GTCAACGTGGACCTCAAGCAGTTAATATCACAAAAGCATAA

Upstream 100 bases:

>100_bases
GTTACTATGAAGAAGTAGATTTTGTCATGAGTAAAATGTTTTATAGATTCACTTTTCGCAAAATGAGATTTACAATTTTT
GTCGAAAGGAAATAAATATT

Downstream 100 bases:

>100_bases
TTATATCTGAAAATCGTGCAAAAACTGGAGTCATGACTTCAGTTTTTTAAATTCAGTTGCAATTATGAGAGAATATGATA
TACTTAGCCAGCAAGAGGAA

Product: cold shock protein cspD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 65

Protein sequence:

>66_residues
MANGTVKWFNATKGFGFITSEDGQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGPQAVNITKA

Sequences:

>Translated_66_residues
MANGTVKWFNATKGFGFITSEDGQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGPQAVNITKA
>Mature_65_residues
ANGTVKWFNATKGFGFITSEDGQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGPQAVNITKA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=62, Percent_Identity=69.3548387096774, Blast_Score=91, Evalue=1e-20,
Organism=Escherichia coli, GI1788126, Length=62, Percent_Identity=66.1290322580645, Blast_Score=89, Evalue=5e-20,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=64.5161290322581, Blast_Score=89, Evalue=7e-20,
Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=63.9344262295082, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1787834, Length=62, Percent_Identity=61.2903225806452, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=60.655737704918, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=55.3846153846154, Blast_Score=77, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24658520, Length=62, Percent_Identity=46.7741935483871, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7199; Mature: 7068

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANGTVKWFNATKGFGFITSEDGQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGPQA
CCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCE
VNITKA
EEEECC
>Mature Secondary Structure 
ANGTVKWFNATKGFGFITSEDGQDLFAHFSAIQSDGFKSLDEGQKVEFDVEEGQRGPQA
CCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCE
VNITKA
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]