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The map label for this gene is cspC [H]

Identifier: 125624080

GI number: 125624080

Start: 1226900

End: 1227100

Strand: Direct

Name: cspC [H]

Synonym: llmg_1255

Alternate gene names: 125624080

Gene position: 1226900-1227100 (Clockwise)

Preceding gene: 125624079

Following gene: 125624081

Centisome position: 48.5

GC content: 32.84

Gene sequence:

>201_bases
ATGAATAAAGGAACAATAAATTGGTTTAACGCCGATAAAGGCTATGGTTTTATTATGGCAGATGATATGCAAGATGTGTT
TGCTTACCTCTTGTCTATTCAAGGAAATGATTTTAAAAAATACGATGAAGGTCAAAAGGTTACTTTTGATATCAAAATGA
CGTCTCGTGGGCGTTATGCTTCAAACGTACATAAAAGATAA

Upstream 100 bases:

>100_bases
TGTTACTATTAAGAGGTAGGTTTTGTCTCGAGTTTAAATGTTTTAGGAATGCACTTTTTCGCAAAATAGGATTTACAGAT
GATGCGAAAGGATGTATTAT

Downstream 100 bases:

>100_bases
ATGATCTAAAGCATGGGATGTCCTGTGCTTTTTATTTATTGCTATTGCAAAAATGAATGAAAATGTTATACTAAGTGAGG
GAAAGATTAGTTGCTTTCCC

Product: cold shock protein cspC

Products: NA

Alternate protein names: CspL [H]

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MNKGTINWFNADKGYGFIMADDMQDVFAYLLSIQGNDFKKYDEGQKVTFDIKMTSRGRYASNVHKR

Sequences:

>Translated_66_residues
MNKGTINWFNADKGYGFIMADDMQDVFAYLLSIQGNDFKKYDEGQKVTFDIKMTSRGRYASNVHKR
>Mature_66_residues
MNKGTINWFNADKGYGFIMADDMQDVFAYLLSIQGNDFKKYDEGQKVTFDIKMTSRGRYASNVHKR

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=50.8196721311475, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1789979, Length=61, Percent_Identity=50.8196721311475, Blast_Score=66, Evalue=5e-13,
Organism=Escherichia coli, GI1788126, Length=62, Percent_Identity=50, Blast_Score=62, Evalue=7e-12,
Organism=Escherichia coli, GI1786841, Length=62, Percent_Identity=46.7741935483871, Blast_Score=62, Evalue=8e-12,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=47.5409836065574, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7678; Mature: 7678

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKGTINWFNADKGYGFIMADDMQDVFAYLLSIQGNDFKKYDEGQKVTFDIKMTSRGRYA
CCCCEEEEEECCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCC
SNVHKR
CCCCCC
>Mature Secondary Structure
MNKGTINWFNADKGYGFIMADDMQDVFAYLLSIQGNDFKKYDEGQKVTFDIKMTSRGRYA
CCCCEEEEEECCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCC
SNVHKR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669; 9439003 [H]