Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 125623981

GI number: 125623981

Start: 1116424

End: 1117206

Strand: Direct

Name: yddE [C]

Synonym: llmg_1150

Alternate gene names: 125623981

Gene position: 1116424-1117206 (Clockwise)

Preceding gene: 125623980

Following gene: 125623983

Centisome position: 44.14

GC content: 36.02

Gene sequence:

>783_bases
ATGAGTTTGAATTATTATGTCGTTGATGCTTTTGCTGACGAAATTTTTAAAGGGAATCCAGCTGCCGTTTATGTTCTTGA
TGAGTGGCTGTCAGCAGAAAATATGCAAAAAATCGCGATTGAAAATAATTTATCTGAGACAGCATTTACAGTAAAAAAAG
ATGATTATTTTGAATTGAGATGGTTTACTCCTGACCGTGAAATTGATCTTTGTGGTCATGCAACATTAGCAACGGCTTTT
GTCCTTTTTAATTATTATGGCGAAAGTGGACCGACCTTGCGTTTTACAAGCCAAAGTGGCGATTTATTTGTTACAAAAAA
TGAAGATGCCTACTATATGGATTTCCCGTCTATCCTACCTAAAAAGGTTGATATTTTACCAGAATATGAAGAAGCTTTGG
GAGCAAAAATTAAGGAAGCTTACTTGGCAAGAGATTTATTTTTTGTTTTAGAGGATGAAGCAACGGTTCGTAACTTACGG
CCTAATTTCACAGCGGTAGAAAAATTTGAACTAGGAATTGGGGTTATTGTTACTTCTGAGGGGAAAGAAGAAGATTTTGT
TTCTCGTACTTTCTTTCCTAAATTAACAATAAATGAAGACCCTGTTTGTGGGTCGGCACATTCTAATCTTATTCCTTATT
GGGCTGAAAAATTGGACAAAAAAGTCTTAACGGCCTATCAAGCCTCAGCACGTGGGGGTTATTTGAAATGTGAACTAAAA
GAAAATCGCGTAAGCATTGGTGGAAAAGCTGTTCTTTTTGCCAAAGGAGAAATTTTTCTTTGA

Upstream 100 bases:

>100_bases
AATATTGAAGAAATTACGATATTCGATGCAGTAGGTTTGGCTGTTGAAGATTTATGTTGTGCAGAATATATTTACAAAAA
ATTAAAATAGGAGATATTTT

Downstream 100 bases:

>100_bases
CATTAATAAAAGCCAGACTTAATTTAAGTCTGGCTTTTTGATATCATTATTTTTAAAGAACTATTGATTGTATTTATTAT
TTTCTTTTTTGATTATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MSLNYYVVDAFADEIFKGNPAAVYVLDEWLSAENMQKIAIENNLSETAFTVKKDDYFELRWFTPDREIDLCGHATLATAF
VLFNYYGESGPTLRFTSQSGDLFVTKNEDAYYMDFPSILPKKVDILPEYEEALGAKIKEAYLARDLFFVLEDEATVRNLR
PNFTAVEKFELGIGVIVTSEGKEEDFVSRTFFPKLTINEDPVCGSAHSNLIPYWAEKLDKKVLTAYQASARGGYLKCELK
ENRVSIGGKAVLFAKGEIFL

Sequences:

>Translated_260_residues
MSLNYYVVDAFADEIFKGNPAAVYVLDEWLSAENMQKIAIENNLSETAFTVKKDDYFELRWFTPDREIDLCGHATLATAF
VLFNYYGESGPTLRFTSQSGDLFVTKNEDAYYMDFPSILPKKVDILPEYEEALGAKIKEAYLARDLFFVLEDEATVRNLR
PNFTAVEKFELGIGVIVTSEGKEEDFVSRTFFPKLTINEDPVCGSAHSNLIPYWAEKLDKKVLTAYQASARGGYLKCELK
ENRVSIGGKAVLFAKGEIFL
>Mature_259_residues
SLNYYVVDAFADEIFKGNPAAVYVLDEWLSAENMQKIAIENNLSETAFTVKKDDYFELRWFTPDREIDLCGHATLATAFV
LFNYYGESGPTLRFTSQSGDLFVTKNEDAYYMDFPSILPKKVDILPEYEEALGAKIKEAYLARDLFFVLEDEATVRNLRP
NFTAVEKFELGIGVIVTSEGKEEDFVSRTFFPKLTINEDPVCGSAHSNLIPYWAEKLDKKVLTAYQASARGGYLKCELKE
NRVSIGGKAVLFAKGEIFL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=287, Percent_Identity=37.2822299651568, Blast_Score=157, Evalue=9e-39,
Organism=Homo sapiens, GI74316009, Length=249, Percent_Identity=37.3493975903614, Blast_Score=135, Evalue=4e-32,
Organism=Escherichia coli, GI1787737, Length=299, Percent_Identity=30.1003344481605, Blast_Score=92, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17542160, Length=315, Percent_Identity=32.3809523809524, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17542154, Length=315, Percent_Identity=32.3809523809524, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17542158, Length=318, Percent_Identity=32.0754716981132, Blast_Score=124, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17542152, Length=318, Percent_Identity=32.0754716981132, Blast_Score=124, Evalue=4e-29,
Organism=Saccharomyces cerevisiae, GI6321818, Length=256, Percent_Identity=31.640625, Blast_Score=85, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29414; Mature: 29282

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNYYVVDAFADEIFKGNPAAVYVLDEWLSAENMQKIAIENNLSETAFTVKKDDYFELR
CCCEEEEEEEHHHHHHCCCCCEEEEEEHHCCCCCCEEEEEECCCCHHEEEEECCCEEEEE
WFTPDREIDLCGHATLATAFVLFNYYGESGPTLRFTSQSGDLFVTKNEDAYYMDFPSILP
EECCCCCEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCEEEEECHHHCC
KKVDILPEYEEALGAKIKEAYLARDLFFVLEDEATVRNLRPNFTAVEKFELGIGVIVTSE
CCCCCCCCHHHHHCHHHHHHHHHHEEEEEEECCHHHHHCCCCCEEEEEEECCEEEEEECC
GKEEDFVSRTFFPKLTINEDPVCGSAHSNLIPYWAEKLDKKVLTAYQASARGGYLKCELK
CCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
ENRVSIGGKAVLFAKGEIFL
CCEEECCCEEEEEECCCEEC
>Mature Secondary Structure 
SLNYYVVDAFADEIFKGNPAAVYVLDEWLSAENMQKIAIENNLSETAFTVKKDDYFELR
CCEEEEEEEHHHHHHCCCCCEEEEEEHHCCCCCCEEEEEECCCCHHEEEEECCCEEEEE
WFTPDREIDLCGHATLATAFVLFNYYGESGPTLRFTSQSGDLFVTKNEDAYYMDFPSILP
EECCCCCEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCEEEEECHHHCC
KKVDILPEYEEALGAKIKEAYLARDLFFVLEDEATVRNLRPNFTAVEKFELGIGVIVTSE
CCCCCCCCHHHHHCHHHHHHHHHHEEEEEEECCHHHHHCCCCCEEEEEEECCEEEEEECC
GKEEDFVSRTFFPKLTINEDPVCGSAHSNLIPYWAEKLDKKVLTAYQASARGGYLKCELK
CCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
ENRVSIGGKAVLFAKGEIFL
CCEEECCCEEEEEECCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]