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The map label for this gene is ocd

Identifier: 125623980

GI number: 125623980

Start: 1115457

End: 1116413

Strand: Direct

Name: ocd

Synonym: llmg_1149

Alternate gene names: NA

Gene position: 1115457-1116413 (Clockwise)

Preceding gene: 125623979

Following gene: 125623981

Centisome position: 44.1

GC content: 36.26

Gene sequence:

>957_bases
ATGAAACAAGTAAGTTATGATGAAGTCATTGAGCAATTGAGCTTTAAAGAATCAATTCAAGTAATGAAAGATTGTTTTAA
TGATCATGAAAATGGAACAATCGCTCAAAGAGAGCGAATGGTTGAAATATTACCTGATGGAAAAGATAAAAATATTTTTG
CTTTAATGCCAGCTTACCTTGGTGAAAAACGCTATTTTGGTGCTAAAATTATTACGGCCTTTCCTGATAATCATAGCTTA
AATCTTCCTTCTCACGTAGGAGAAGTTATGCTATTTGACTCACAAAATGGTCTTCCAGTTGCGCTTATTAATGCAAATGC
GATTACTTGGATTCGGACTGCTGCAGTTTCAGCTCTAGCAACAAATTTTTTGGCAAAAGAAGACTCATCAATCCTTACTC
TTCTTGGAACTGGGCAACAGGCCAGCTCACATTTGGAAGCTATTTTATGTGTGCGTCCAATCAAAGTAGTGCGTGTCTAT
GACCTCAATCAAAAAGCAGCTGCAGCATTTATTGAACGTATGCAGGCGAATCATCCTGAGTTGGAATTTATCAATTCTAA
CAATCTTAGAGAAGCAGTAGAACATTCAGATATTGTATGTACATTAACACCAAGTAAGGAAGCCTTTTTGGAAGCTGACT
TTATTTCGGCAGGGACACATATTAACGCTATTGGAACTTTCACTCCAACTACACGGGAACTTAAGAGTGAGTTGATGGTC
AAAGGGAAGGTTTATATTGATGATTATGAAGCAGCTTTAAAAGAGAGCGGAGATTTATTAATTCCAATTGCCGAAGGGCT
GATGAAAGAAGAAAATATCGTTGGCTCTTTAGGAGAATTGGTTACAGATAAAGTAGCTGGTCGAGCAAATATTGAAGAAA
TTACGATATTCGATGCAGTAGGTTTGGCTGTTGAAGATTTATGTTGTGCAGAATATATTTACAAAAAATTAAAATAG

Upstream 100 bases:

>100_bases
TAAAGCAATGCGTATGCCATACAATATTAATATTGTATCTCGTCAATAGTAGAGATATAATATTAACAGAACAAAATAAA
TCTTAGTAAGAGAGAGTAGT

Downstream 100 bases:

>100_bases
GAGATATTTTATGAGTTTGAATTATTATGTCGTTGATGCTTTTGCTGACGAAATTTTTAAAGGGAATCCAGCTGCCGTTT
ATGTTCTTGATGAGTGGCTG

Product: ornithine cyclodeaminase, mu-crystallin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MKQVSYDEVIEQLSFKESIQVMKDCFNDHENGTIAQRERMVEILPDGKDKNIFALMPAYLGEKRYFGAKIITAFPDNHSL
NLPSHVGEVMLFDSQNGLPVALINANAITWIRTAAVSALATNFLAKEDSSILTLLGTGQQASSHLEAILCVRPIKVVRVY
DLNQKAAAAFIERMQANHPELEFINSNNLREAVEHSDIVCTLTPSKEAFLEADFISAGTHINAIGTFTPTTRELKSELMV
KGKVYIDDYEAALKESGDLLIPIAEGLMKEENIVGSLGELVTDKVAGRANIEEITIFDAVGLAVEDLCCAEYIYKKLK

Sequences:

>Translated_318_residues
MKQVSYDEVIEQLSFKESIQVMKDCFNDHENGTIAQRERMVEILPDGKDKNIFALMPAYLGEKRYFGAKIITAFPDNHSL
NLPSHVGEVMLFDSQNGLPVALINANAITWIRTAAVSALATNFLAKEDSSILTLLGTGQQASSHLEAILCVRPIKVVRVY
DLNQKAAAAFIERMQANHPELEFINSNNLREAVEHSDIVCTLTPSKEAFLEADFISAGTHINAIGTFTPTTRELKSELMV
KGKVYIDDYEAALKESGDLLIPIAEGLMKEENIVGSLGELVTDKVAGRANIEEITIFDAVGLAVEDLCCAEYIYKKLK
>Mature_318_residues
MKQVSYDEVIEQLSFKESIQVMKDCFNDHENGTIAQRERMVEILPDGKDKNIFALMPAYLGEKRYFGAKIITAFPDNHSL
NLPSHVGEVMLFDSQNGLPVALINANAITWIRTAAVSALATNFLAKEDSSILTLLGTGQQASSHLEAILCVRPIKVVRVY
DLNQKAAAAFIERMQANHPELEFINSNNLREAVEHSDIVCTLTPSKEAFLEADFISAGTHINAIGTFTPTTRELKSELMV
KGKVYIDDYEAALKESGDLLIPIAEGLMKEENIVGSLGELVTDKVAGRANIEEITIFDAVGLAVEDLCCAEYIYKKLK

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=290, Percent_Identity=36.551724137931, Blast_Score=169, Evalue=2e-42,
Organism=Homo sapiens, GI62241008, Length=273, Percent_Identity=36.996336996337, Blast_Score=167, Evalue=1e-41,
Organism=Drosophila melanogaster, GI24642678, Length=304, Percent_Identity=26.9736842105263, Blast_Score=90, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014334
- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: NA

Molecular weight: Translated: 35098; Mature: 35098

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVSYDEVIEQLSFKESIQVMKDCFNDHENGTIAQRERMVEILPDGKDKNIFALMPAYL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEHHHH
GEKRYFGAKIITAFPDNHSLNLPSHVGEVMLFDSQNGLPVALINANAITWIRTAAVSALA
CCCCCCCEEEEEECCCCCCCCCCHHCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHH
TNFLAKEDSSILTLLGTGQQASSHLEAILCVRPIKVVRVYDLNQKAAAAFIERMQANHPE
HHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHCCCCC
LEFINSNNLREAVEHSDIVCTLTPSKEAFLEADFISAGTHINAIGTFTPTTRELKSELMV
EEEECCCCHHHHHHCCCEEEEECCCHHHHEEHHHHCCCCEEEEEECCCCCHHHHHHHHEE
KGKVYIDDYEAALKESGDLLIPIAEGLMKEENIVGSLGELVTDKVAGRANIEEITIFDAV
CCEEEEECHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHH
GLAVEDLCCAEYIYKKLK
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKQVSYDEVIEQLSFKESIQVMKDCFNDHENGTIAQRERMVEILPDGKDKNIFALMPAYL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEHHHH
GEKRYFGAKIITAFPDNHSLNLPSHVGEVMLFDSQNGLPVALINANAITWIRTAAVSALA
CCCCCCCEEEEEECCCCCCCCCCHHCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHH
TNFLAKEDSSILTLLGTGQQASSHLEAILCVRPIKVVRVYDLNQKAAAAFIERMQANHPE
HHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHCCCCC
LEFINSNNLREAVEHSDIVCTLTPSKEAFLEADFISAGTHINAIGTFTPTTRELKSELMV
EEEECCCCHHHHHHCCCEEEEECCCHHHHEEHHHHCCCCEEEEEECCCCCHHHHHHHHEE
KGKVYIDDYEAALKESGDLLIPIAEGLMKEENIVGSLGELVTDKVAGRANIEEITIFDAV
CCEEEEECHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHH
GLAVEDLCCAEYIYKKLK
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]