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The map label for this gene is deoC [H]

Identifier: 125623893

GI number: 125623893

Start: 1022381

End: 1023043

Strand: Direct

Name: deoC [H]

Synonym: llmg_1062

Alternate gene names: 125623893

Gene position: 1022381-1023043 (Clockwise)

Preceding gene: 125623892

Following gene: 125623894

Centisome position: 40.42

GC content: 38.31

Gene sequence:

>663_bases
ATGCAAATTAATAAATATATTGACCATACTATTCTCAAGGCAGACGCTCCAAAATCTAAAGTTCAACAAATCATCGATGA
AGCAAAAAAATATGATTTCATGAGTGTTTGTATCAACCCGACTTGGGTAAATTATGCCAGTCAAGAACTCAAAGACTCTG
ATGTAAAAGTATGTACAGTTATTGGCTTCCCTTTAGGTGCTAATACTTCTGAACTCAAAGCATTTGAAGCTAAAAACGCC
ATTGAAAATGGGGCTGACGAAATTGACATGGTCATTAATATTGGTGCAGCCAAATCTAAGGATTGGGATCTTGTTGAGTC
AGATATTGCAGATGTAAATGCTGTGAAAGGCGATAAACTACTCAAGGTGATTATTGAAACGAGTCTTTTGACTGATGAAG
AAAAAATTAAAGCTTGCCAAATTGCTAAGGCCGTTGGTGCTGATTTTGTCAAAACTTCAACAGGTTTCTCAACTGGAGGA
GCGGCAGTCCATGATGTAAAATTAATGCGTCAAACTGTAGGTCCAGATATGGGAGTTAAAGCCTCTGGTGGTGTTCATAA
TCTTGAAGAAGCAAAAGCAATGATTGATGCTGGAGCAACTCGTCTTGGAGTTTCTGCTGGTGTCGCAATTATGGAAGGTC
TTACCTCAAATGACAGCTACTAA

Upstream 100 bases:

>100_bases
TTGGCTTATTCAACTTATTGCTTTTATCATTATTTTCGTCGTTGTCTATCTCATTGTCGGAATGATTTATTTAAGATTAA
AAAAATAGAAAGAACATACA

Downstream 100 bases:

>100_bases
AGAGATGATAGTGGCTGCTCGTGAGGCTGCAAGTCTAGCCTACGTCCCTTACTCACACTTTCCAGTTGGAGCAGCTTTTC
TAACAGCTGATGGTCAGGTT

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MQINKYIDHTILKADAPKSKVQQIIDEAKKYDFMSVCINPTWVNYASQELKDSDVKVCTVIGFPLGANTSELKAFEAKNA
IENGADEIDMVINIGAAKSKDWDLVESDIADVNAVKGDKLLKVIIETSLLTDEEKIKACQIAKAVGADFVKTSTGFSTGG
AAVHDVKLMRQTVGPDMGVKASGGVHNLEEAKAMIDAGATRLGVSAGVAIMEGLTSNDSY

Sequences:

>Translated_220_residues
MQINKYIDHTILKADAPKSKVQQIIDEAKKYDFMSVCINPTWVNYASQELKDSDVKVCTVIGFPLGANTSELKAFEAKNA
IENGADEIDMVINIGAAKSKDWDLVESDIADVNAVKGDKLLKVIIETSLLTDEEKIKACQIAKAVGADFVKTSTGFSTGG
AAVHDVKLMRQTVGPDMGVKASGGVHNLEEAKAMIDAGATRLGVSAGVAIMEGLTSNDSY
>Mature_220_residues
MQINKYIDHTILKADAPKSKVQQIIDEAKKYDFMSVCINPTWVNYASQELKDSDVKVCTVIGFPLGANTSELKAFEAKNA
IENGADEIDMVINIGAAKSKDWDLVESDIADVNAVKGDKLLKVIIETSLLTDEEKIKACQIAKAVGADFVKTSTGFSTGG
AAVHDVKLMRQTVGPDMGVKASGGVHNLEEAKAMIDAGATRLGVSAGVAIMEGLTSNDSY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=225, Percent_Identity=29.3333333333333, Blast_Score=75, Evalue=6e-14,
Organism=Escherichia coli, GI1790841, Length=204, Percent_Identity=33.8235294117647, Blast_Score=83, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17533015, Length=212, Percent_Identity=27.8301886792453, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23455; Mature: 23455

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQINKYIDHTILKADAPKSKVQQIIDEAKKYDFMSVCINPTWVNYASQELKDSDVKVCTV
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCEEEEE
IGFPLGANTSELKAFEAKNAIENGADEIDMVINIGAAKSKDWDLVESDIADVNAVKGDKL
EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHH
LKVIIETSLLTDEEKIKACQIAKAVGADFVKTSTGFSTGGAAVHDVKLMRQTVGPDMGVK
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
ASGGVHNLEEAKAMIDAGATRLGVSAGVAIMEGLTSNDSY
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQINKYIDHTILKADAPKSKVQQIIDEAKKYDFMSVCINPTWVNYASQELKDSDVKVCTV
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHCCCCCEEEEE
IGFPLGANTSELKAFEAKNAIENGADEIDMVINIGAAKSKDWDLVESDIADVNAVKGDKL
EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHH
LKVIIETSLLTDEEKIKACQIAKAVGADFVKTSTGFSTGGAAVHDVKLMRQTVGPDMGVK
HHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
ASGGVHNLEEAKAMIDAGATRLGVSAGVAIMEGLTSNDSY
CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]