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The map label for this gene is xylA [H]

Identifier: 125623839

GI number: 125623839

Start: 968454

End: 969149

Strand: Direct

Name: xylA [H]

Synonym: llmg_1002

Alternate gene names: 125623839

Gene position: 968454-969149 (Clockwise)

Preceding gene: 125623837

Following gene: 125623841

Centisome position: 38.29

GC content: 38.94

Gene sequence:

>696_bases
ATGGCTTACTTTAACGACATCGCACCTATCAAATACGAAGGTACAAAAACTAAAAACATGTTTGCCTTCCGCCATTATAA
CCCAGAAGAAGTGGTTGCTGGGAAAACAATGGAAGAACAGCTTCATTTCGCCCTTGCTTTTTGGCATACAATTACGATGG
ACGGGGCTGACCCATTTGGTAGTGCCACAATGGAACGTCCTTGGGACTTGGAAGGTGGCTCTGAACTTGACCGTGCTCAT
CGTCGAGTAGATGCTTTCTTTGAAATTGCCGAAAAATTGGGTGTTAAATATTATTGTTTCCATGATATTGACATCGCGCC
TACAGGAAATTCTTTGAAAGAATTTTATGCAAACTTAGATGAAATTACTGACCATCTTCTTGAAAAACAAAAAGAAACAG
GCATTAAACTCCTCTGGAATACGGCAAATATGTTCTCAAACCCACGTTATATGAATGGGGTTTCGACATCAAATCGTGCT
GAAGTTTTTGCTTATGGTGCTGCTCAAGTCAAAAAAGGACTTGAACTTTCTAAAAAACTTGATGGTGAAAACTATGTATT
CTGGGGTGGTCGTGAAGGTTACGAATCACTTTTGAACACAGACATGGGTCTTGAAATGGATCACATGGCAAAATTCTTCC
ATTTGGCGATTGATTATGCAAAATGGTTCTGTTGCAAAGTTTTAAATAAAGAATAA

Upstream 100 bases:

>100_bases
TCCTAATCACTATTATTATGACATACATTACAACAAATGTATAGTAGTAATTTCGAGTTTGAAAATAATATTAATATCAT
AAAGAGGAGGAGCTATAAAA

Downstream 100 bases:

>100_bases
AATCCCTTACGGTATCTATGATTTAAGCTGGGATTCCCAATAATATCTTGATTTCAGTACAGACCGAAAACCCGAAGAGA
GTGCCTTCTTTTCGGGTTTT

Product: XylA protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MAYFNDIAPIKYEGTKTKNMFAFRHYNPEEVVAGKTMEEQLHFALAFWHTITMDGADPFGSATMERPWDLEGGSELDRAH
RRVDAFFEIAEKLGVKYYCFHDIDIAPTGNSLKEFYANLDEITDHLLEKQKETGIKLLWNTANMFSNPRYMNGVSTSNRA
EVFAYGAAQVKKGLELSKKLDGENYVFWGGREGYESLLNTDMGLEMDHMAKFFHLAIDYAKWFCCKVLNKE

Sequences:

>Translated_231_residues
MAYFNDIAPIKYEGTKTKNMFAFRHYNPEEVVAGKTMEEQLHFALAFWHTITMDGADPFGSATMERPWDLEGGSELDRAH
RRVDAFFEIAEKLGVKYYCFHDIDIAPTGNSLKEFYANLDEITDHLLEKQKETGIKLLWNTANMFSNPRYMNGVSTSNRA
EVFAYGAAQVKKGLELSKKLDGENYVFWGGREGYESLLNTDMGLEMDHMAKFFHLAIDYAKWFCCKVLNKE
>Mature_230_residues
AYFNDIAPIKYEGTKTKNMFAFRHYNPEEVVAGKTMEEQLHFALAFWHTITMDGADPFGSATMERPWDLEGGSELDRAHR
RVDAFFEIAEKLGVKYYCFHDIDIAPTGNSLKEFYANLDEITDHLLEKQKETGIKLLWNTANMFSNPRYMNGVSTSNRAE
VFAYGAAQVKKGLELSKKLDGENYVFWGGREGYESLLNTDMGLEMDHMAKFFHLAIDYAKWFCCKVLNKE

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=218, Percent_Identity=49.5412844036697, Blast_Score=236, Evalue=1e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 26580; Mature: 26449

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYFNDIAPIKYEGTKTKNMFAFRHYNPEEVVAGKTMEEQLHFALAFWHTITMDGADPFG
CCCCCCCCCEEECCCCCCCEEEEECCCHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCCC
SATMERPWDLEGGSELDRAHRRVDAFFEIAEKLGVKYYCFHDIDIAPTGNSLKEFYANLD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEECCCCHHHHHHHHHHH
EITDHLLEKQKETGIKLLWNTANMFSNPRYMNGVSTSNRAEVFAYGAAQVKKGLELSKKL
HHHHHHHHHHHHCCEEEEEECHHHHCCCCEECCCCCCCCCEEEEECHHHHHHHHHHHHHC
DGENYVFWGGREGYESLLNTDMGLEMDHMAKFFHLAIDYAKWFCCKVLNKE
CCCCEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AYFNDIAPIKYEGTKTKNMFAFRHYNPEEVVAGKTMEEQLHFALAFWHTITMDGADPFG
CCCCCCCCEEECCCCCCCEEEEECCCHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCCC
SATMERPWDLEGGSELDRAHRRVDAFFEIAEKLGVKYYCFHDIDIAPTGNSLKEFYANLD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCEECCCCHHHHHHHHHHH
EITDHLLEKQKETGIKLLWNTANMFSNPRYMNGVSTSNRAEVFAYGAAQVKKGLELSKKL
HHHHHHHHHHHHCCEEEEEECHHHHCCCCEECCCCCCCCCEEEEECHHHHHHHHHHHHHC
DGENYVFWGGREGYESLLNTDMGLEMDHMAKFFHLAIDYAKWFCCKVLNKE
CCCCEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA