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The map label for this gene is ybdH [H]

Identifier: 125623786

GI number: 125623786

Start: 913106

End: 914185

Strand: Direct

Name: ybdH [H]

Synonym: llmg_0945

Alternate gene names: 125623786

Gene position: 913106-914185 (Clockwise)

Preceding gene: 125623785

Following gene: 125623787

Centisome position: 36.1

GC content: 37.59

Gene sequence:

>1080_bases
ATGAAACTCTCAGAAGAAGTCCGTCCCGGAGCAAATAGATACGTGAGTGGTCAAGAAATTTTGCAAGATTTAGAAGCTTA
CCTTGCGCCATTTAAGGAACTTGCCGTGATTACTGGCGAGAAATCATTTCAAGTTTTTCAAGATTTTTATCCTAAAACTC
TTTCTTATCCTATTTTTCATTATGACGGCACAGCATCTGTTGAAAACGGGAAAAAGCTAGCAAAAGAAATCGGTAATGTT
GAGGCTATTCTTGCGATAGGGGGCGGGCGTTTGATTGATACTTGTAAAGTAGTGGCACAAGAGCTTGATTGTGAGTTGAT
AATCATTCCTACTTTAGTATCGAATTGTGCACCTTATACACCAGTTGCTGCGCTTTATCATCCAGACCATACTTTTGATA
AAGTCGGATATTTAAATAAAGTCAGTTATTTGACCTTAGTGGATTATGATTTTTTAGTAGCGACTCCCTATGATTATTTT
GTTGCTGGAATTGGAGATACACTCGCAAAATGGTATGAAATGGAAGGAATTATTCGTCAAGTCCCCCAAGAAGAATTGTC
AGCTTCCGTTCGTTTAGGTTTTGTCAGTGCCAAAGAAATTTTTAAAATATTATTTGCAGATTCAAAGGCGGCTTTGGAGG
ATTTAAGTAAGCAAAAAGTAAGTCCAGCTTTTGGACGTATTGTAGACACAATCATTGAACTTTCGGGCACGGTGGGTGGA
TTTGCTGGAACTTATGGGCGAATGTCAGGTGCTCACGCGCTCCATAATGGACTTTCGCTTTGTCCAGAAACGCACGCTAT
TTTACATGGTTCAAAAGTTGCTTATGGTGTTTTAGTTCAATTGGCTTATACAAGGGATTATTTAGAAATTGAGAAACTAT
TACCTTTCTATCGAGAAAATCATTTGCCTGCTTCTTTAGAAGAAATAAATTTATCCAATCCTAATTTGAAAAAACTGAAA
GAAGCGGCAGAATTTGCAGCTAGTCCTGTTGAATCTTATCGCTTAATCGATGAAAAAGTGAGCGGGGAAAAAATAATTTC
AGCCATAAAAGTACTGGAAAGCTTGGTCAGTAAAAAATAA

Upstream 100 bases:

>100_bases
TTGATTTAGAATAAAAACAACATTTACTTAAAAAAATGTTGTTTTTTTGTGCCTTAAGTGATAGAATATTCTAAATAATT
ATTTAATTAGGAGGAAAATT

Downstream 100 bases:

>100_bases
TAACTGAAAGTTCTGTCAGTAAATACAAAGTTACTGACCAGATTTTTGATTTTTGAATTAAAAATCTAATGAGGAAAAAA
ATAATGACGATAAGTTTACA

Product: putative glycerol dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MKLSEEVRPGANRYVSGQEILQDLEAYLAPFKELAVITGEKSFQVFQDFYPKTLSYPIFHYDGTASVENGKKLAKEIGNV
EAILAIGGGRLIDTCKVVAQELDCELIIIPTLVSNCAPYTPVAALYHPDHTFDKVGYLNKVSYLTLVDYDFLVATPYDYF
VAGIGDTLAKWYEMEGIIRQVPQEELSASVRLGFVSAKEIFKILFADSKAALEDLSKQKVSPAFGRIVDTIIELSGTVGG
FAGTYGRMSGAHALHNGLSLCPETHAILHGSKVAYGVLVQLAYTRDYLEIEKLLPFYRENHLPASLEEINLSNPNLKKLK
EAAEFAASPVESYRLIDEKVSGEKIISAIKVLESLVSKK

Sequences:

>Translated_359_residues
MKLSEEVRPGANRYVSGQEILQDLEAYLAPFKELAVITGEKSFQVFQDFYPKTLSYPIFHYDGTASVENGKKLAKEIGNV
EAILAIGGGRLIDTCKVVAQELDCELIIIPTLVSNCAPYTPVAALYHPDHTFDKVGYLNKVSYLTLVDYDFLVATPYDYF
VAGIGDTLAKWYEMEGIIRQVPQEELSASVRLGFVSAKEIFKILFADSKAALEDLSKQKVSPAFGRIVDTIIELSGTVGG
FAGTYGRMSGAHALHNGLSLCPETHAILHGSKVAYGVLVQLAYTRDYLEIEKLLPFYRENHLPASLEEINLSNPNLKKLK
EAAEFAASPVESYRLIDEKVSGEKIISAIKVLESLVSKK
>Mature_359_residues
MKLSEEVRPGANRYVSGQEILQDLEAYLAPFKELAVITGEKSFQVFQDFYPKTLSYPIFHYDGTASVENGKKLAKEIGNV
EAILAIGGGRLIDTCKVVAQELDCELIIIPTLVSNCAPYTPVAALYHPDHTFDKVGYLNKVSYLTLVDYDFLVATPYDYF
VAGIGDTLAKWYEMEGIIRQVPQEELSASVRLGFVSAKEIFKILFADSKAALEDLSKQKVSPAFGRIVDTIIELSGTVGG
FAGTYGRMSGAHALHNGLSLCPETHAILHGSKVAYGVLVQLAYTRDYLEIEKLLPFYRENHLPASLEEINLSNPNLKKLK
EAAEFAASPVESYRLIDEKVSGEKIISAIKVLESLVSKK

Specific function: Unknown

COG id: COG0371

COG function: function code C; Glycerol dehydrogenase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786815, Length=324, Percent_Identity=32.7160493827161, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI87082352, Length=355, Percent_Identity=27.3239436619718, Blast_Score=133, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211
- InterPro:   IPR016205 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 39583; Mature: 39583

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00913 ADH_IRON_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSEEVRPGANRYVSGQEILQDLEAYLAPFKELAVITGEKSFQVFQDFYPKTLSYPIFH
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHCCHHHCCCEEE
YDGTASVENGKKLAKEIGNVEAILAIGGGRLIDTCKVVAQELDCELIIIPTLVSNCAPYT
ECCCCCHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEHHHHHHCCCCCC
PVAALYHPDHTFDKVGYLNKVSYLTLVDYDFLVATPYDYFVAGIGDTLAKWYEMEGIIRQ
CCCEEECCCCCHHHHHHHHHHHEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHH
VPQEELSASVRLGFVSAKEIFKILFADSKAALEDLSKQKVSPAFGRIVDTIIELSGTVGG
CCHHHHHHHHHEEHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
FAGTYGRMSGAHALHNGLSLCPETHAILHGSKVAYGVLVQLAYTRDYLEIEKLLPFYREN
CHHHHHHCCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HLPASLEEINLSNPNLKKLKEAAEFAASPVESYRLIDEKVSGEKIISAIKVLESLVSKK
CCCCCHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLSEEVRPGANRYVSGQEILQDLEAYLAPFKELAVITGEKSFQVFQDFYPKTLSYPIFH
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHCCHHHCCCEEE
YDGTASVENGKKLAKEIGNVEAILAIGGGRLIDTCKVVAQELDCELIIIPTLVSNCAPYT
ECCCCCHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEHHHHHHCCCCCC
PVAALYHPDHTFDKVGYLNKVSYLTLVDYDFLVATPYDYFVAGIGDTLAKWYEMEGIIRQ
CCCEEECCCCCHHHHHHHHHHHEEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHH
VPQEELSASVRLGFVSAKEIFKILFADSKAALEDLSKQKVSPAFGRIVDTIIELSGTVGG
CCHHHHHHHHHEEHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
FAGTYGRMSGAHALHNGLSLCPETHAILHGSKVAYGVLVQLAYTRDYLEIEKLLPFYREN
CHHHHHHCCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
HLPASLEEINLSNPNLKKLKEAAEFAASPVESYRLIDEKVSGEKIISAIKVLESLVSKK
CCCCCHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1848300; 7567469 [H]