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The map label for this gene is rimM [H]

Identifier: 125623777

GI number: 125623777

Start: 905253

End: 905768

Strand: Direct

Name: rimM [H]

Synonym: llmg_0936

Alternate gene names: 125623777

Gene position: 905253-905768 (Clockwise)

Preceding gene: 125623776

Following gene: 125623778

Centisome position: 35.79

GC content: 33.72

Gene sequence:

>516_bases
ATGGAAAACTTTTACAAAGTAGGAACAATTGTTAATACACAGGGACTTCAAGGTGAAGTTCGAATACTACCATCAACAGA
TTTTGCTAACGAGCGCTTTTCAAAAGGGGCAGTATTAGCACTTTTTGATGATAAAGATAACTATATTCAAGATTTAAAAG
TGAAATCTGGTCGATTACAAAAGAATTTTTATGTGGTCAAATTTGAAGGATTTTATCATATCAATGATGTCGAAAAATAT
AAAGGTTATGTTGTTAAAATTGCGCAAGAAAATCAAGAAGAGTTAAATGATGGGGAATTTTACTATCATGAAATTATTGG
AAGTGATGTTTATGACAATGACATTTTAATTGGTCAGATCTCTGAAATTCTTCAACCAGGTGCCAATGATGTCTGGGTCG
TTAAACGTAAAGGAAAACGTGATTTACTTTTACCTTATATCCCACCTGTTGTCCTGAAAGTAGATGTGGCTCAGCATCGA
GTTGATGTGGACATCATGGAAGGATTGGATGACTAA

Upstream 100 bases:

>100_bases
TATATTTCAAAAATTTTAAAATTTTGTATTCTTTAAAAGAAATCTGCTCAAAAATAGTTTCATTTAAATCAGGGCTTAGT
TGATATGTTATAATTAGGGA

Downstream 100 bases:

>100_bases
GGGCATGAGAATTGATATTTTAAGTATTTTTCCTGATATGTTTGGTCCACTTAACCAGTCAATAGTTGGCAAGGCTCAAG
ATAAAGGTATTTTAGAATTA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MENFYKVGTIVNTQGLQGEVRILPSTDFANERFSKGAVLALFDDKDNYIQDLKVKSGRLQKNFYVVKFEGFYHINDVEKY
KGYVVKIAQENQEELNDGEFYYHEIIGSDVYDNDILIGQISEILQPGANDVWVVKRKGKRDLLLPYIPPVVLKVDVAQHR
VDVDIMEGLDD

Sequences:

>Translated_171_residues
MENFYKVGTIVNTQGLQGEVRILPSTDFANERFSKGAVLALFDDKDNYIQDLKVKSGRLQKNFYVVKFEGFYHINDVEKY
KGYVVKIAQENQEELNDGEFYYHEIIGSDVYDNDILIGQISEILQPGANDVWVVKRKGKRDLLLPYIPPVVLKVDVAQHR
VDVDIMEGLDD
>Mature_171_residues
MENFYKVGTIVNTQGLQGEVRILPSTDFANERFSKGAVLALFDDKDNYIQDLKVKSGRLQKNFYVVKFEGFYHINDVEKY
KGYVVKIAQENQEELNDGEFYYHEIIGSDVYDNDILIGQISEILQPGANDVWVVKRKGKRDLLLPYIPPVVLKVDVAQHR
VDVDIMEGLDD

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 19650; Mature: 19650

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENFYKVGTIVNTQGLQGEVRILPSTDFANERFSKGAVLALFDDKDNYIQDLKVKSGRLQ
CCCEEEECEEEECCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCHHEEECCCCEE
KNFYVVKFEGFYHINDVEKYKGYVVKIAQENQEELNDGEFYYHEIIGSDVYDNDILIGQI
CCEEEEEEECEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEH
SEILQPGANDVWVVKRKGKRDLLLPYIPPVVLKVDVAQHRVDVDIMEGLDD
HHHHCCCCCCEEEEEECCCCCEECCCCCCEEEEEEHHHHCCCCHHHCCCCC
>Mature Secondary Structure
MENFYKVGTIVNTQGLQGEVRILPSTDFANERFSKGAVLALFDDKDNYIQDLKVKSGRLQ
CCCEEEECEEEECCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCHHEEECCCCEE
KNFYVVKFEGFYHINDVEKYKGYVVKIAQENQEELNDGEFYYHEIIGSDVYDNDILIGQI
CCEEEEEEECEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCEEEEEH
SEILQPGANDVWVVKRKGKRDLLLPYIPPVVLKVDVAQHRVDVDIMEGLDD
HHHHCCCCCCEEEEEECCCCCEECCCCCCEEEEEEHHHHCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]