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The map label for this gene is yrdC [C]

Identifier: 125623427

GI number: 125623427

Start: 554595

End: 555515

Strand: Direct

Name: yrdC [C]

Synonym: llmg_0562

Alternate gene names: 125623427

Gene position: 554595-555515 (Clockwise)

Preceding gene: 125623426

Following gene: 125623428

Centisome position: 21.93

GC content: 34.53

Gene sequence:

>921_bases
ATGAAAGTTGAAAATGATTTGCGTACGATGTCCTCTTTTTTGCAAGTGCAATTAAAAGATGTCAAAACTTTGGTTGAATC
TAACAAGATAGGCCAAGCTAAAGAAACTTTGAACTTTGTTCAAGGCGGACTCAATAATTTTGCTAATGAACTTGAAAAAG
TTGAAGGTGGATTTTATGGTATTATTGGCTTTCTTTTTCGCCGTCCTTATAAAGTACCAGATGATTTGAAAGATATCAGA
GAAAATCTTTTTATTGAAGCAAATAAACTGCAAAAAGATTTAGATAAACAATCAGAAAAAGAAAATAATAGTAAAAATCG
AATGACAGCGAGAGCAGTAAAAGCGCTAAAAAATGGACAATTAGTGGTTTTACCAACTGAAACAGTTTATGGTTTATTTG
CAGATGCCATGAATGAGCAAGCGGTCCAAAAACTTTATTCGGTTAAAGGACGTCCAACCGAAAAAGCTTTAAATATGAAT
GTTTCAAGTTTTGAAGATATTCTAAAATATTCCATCAACACACCAGATTATTTACGTAAAATTGTTGATGCTTTTCTTCC
TGGCCCTCTAACTATCATTTTAGAAGCTTCTAGCGAAGTCCCTGAATGGATTCATATTGGCAAAAGCACTGTTGGTTTTA
GAATGCCCAACATAGCAGTGACCCAAAAAGTAATTAAAGAAGTCGGTGTTTTGGTCGGACCTTCCGCTAATTTAACCGGT
TCTAAAAGTCCAAGTTTCTTTGCCGATTTAAGTCCTGAAATTTTAGAAAATGCCGCAGTCGCTGTTCAAGATGATAGCAT
CTATGGATTAGATACGACCATCATTGATTTGACGCAAGAAAAACCAAAATTATTACGTCAAGGGGCAGTAACTAAGGCAG
AACTACTTAAAAAAGTTCCTGAACTTGGACAAATTGAATAA

Upstream 100 bases:

>100_bases
CTCATATAATAAGCAATTATTTTGTTGAAAATTATGACCAACCCATTTTTGAAGGGAAACAGCAATTAAAATATAAAATA
TATTTAAGAAAGAAGTTAAA

Downstream 100 bases:

>100_bases
AATACGCTGAGAAAAAGTAATCTAAAAATTTCCGAACAATCTTTGGCAAGCTGAAGATTTCTAAGCCAACATATTTCAAA
AAATGTGCTTTAGCCGATAT

Product: putative translation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKVENDLRTMSSFLQVQLKDVKTLVESNKIGQAKETLNFVQGGLNNFANELEKVEGGFYGIIGFLFRRPYKVPDDLKDIR
ENLFIEANKLQKDLDKQSEKENNSKNRMTARAVKALKNGQLVVLPTETVYGLFADAMNEQAVQKLYSVKGRPTEKALNMN
VSSFEDILKYSINTPDYLRKIVDAFLPGPLTIILEASSEVPEWIHIGKSTVGFRMPNIAVTQKVIKEVGVLVGPSANLTG
SKSPSFFADLSPEILENAAVAVQDDSIYGLDTTIIDLTQEKPKLLRQGAVTKAELLKKVPELGQIE

Sequences:

>Translated_306_residues
MKVENDLRTMSSFLQVQLKDVKTLVESNKIGQAKETLNFVQGGLNNFANELEKVEGGFYGIIGFLFRRPYKVPDDLKDIR
ENLFIEANKLQKDLDKQSEKENNSKNRMTARAVKALKNGQLVVLPTETVYGLFADAMNEQAVQKLYSVKGRPTEKALNMN
VSSFEDILKYSINTPDYLRKIVDAFLPGPLTIILEASSEVPEWIHIGKSTVGFRMPNIAVTQKVIKEVGVLVGPSANLTG
SKSPSFFADLSPEILENAAVAVQDDSIYGLDTTIIDLTQEKPKLLRQGAVTKAELLKKVPELGQIE
>Mature_306_residues
MKVENDLRTMSSFLQVQLKDVKTLVESNKIGQAKETLNFVQGGLNNFANELEKVEGGFYGIIGFLFRRPYKVPDDLKDIR
ENLFIEANKLQKDLDKQSEKENNSKNRMTARAVKALKNGQLVVLPTETVYGLFADAMNEQAVQKLYSVKGRPTEKALNMN
VSSFEDILKYSINTPDYLRKIVDAFLPGPLTIILEASSEVPEWIHIGKSTVGFRMPNIAVTQKVIKEVGVLVGPSANLTG
SKSPSFFADLSPEILENAAVAVQDDSIYGLDTTIIDLTQEKPKLLRQGAVTKAELLKKVPELGQIE

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=176, Percent_Identity=30.6818181818182, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI2367210, Length=142, Percent_Identity=28.8732394366197, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081864, Length=195, Percent_Identity=24.1025641025641, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17537239, Length=200, Percent_Identity=30.5, Blast_Score=70, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6321269, Length=202, Percent_Identity=29.7029702970297, Blast_Score=81, Evalue=2e-16,
Organism=Drosophila melanogaster, GI78707274, Length=197, Percent_Identity=30.9644670050761, Blast_Score=78, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 33991; Mature: 33991

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVENDLRTMSSFLQVQLKDVKTLVESNKIGQAKETLNFVQGGLNNFANELEKVEGGFYG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IIGFLFRRPYKVPDDLKDIRENLFIEANKLQKDLDKQSEKENNSKNRMTARAVKALKNGQ
HHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
LVVLPTETVYGLFADAMNEQAVQKLYSVKGRPTEKALNMNVSSFEDILKYSINTPDYLRK
EEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHH
IVDAFLPGPLTIILEASSEVPEWIHIGKSTVGFRMPNIAVTQKVIKEVGVLVGPSANLTG
HHHHHCCCCEEEEEECCCCCCHHHHCCCCHHCCCCCCHHHHHHHHHHHCEEECCCCCCCC
SKSPSFFADLSPEILENAAVAVQDDSIYGLDTTIIDLTQEKPKLLRQGAVTKAELLKKVP
CCCCCHHHCCCHHHHCCCCEEEECCCEECCCHHHEECCHHHHHHHHHCCCCHHHHHHHCC
ELGQIE
CCCCCC
>Mature Secondary Structure
MKVENDLRTMSSFLQVQLKDVKTLVESNKIGQAKETLNFVQGGLNNFANELEKVEGGFYG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
IIGFLFRRPYKVPDDLKDIRENLFIEANKLQKDLDKQSEKENNSKNRMTARAVKALKNGQ
HHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
LVVLPTETVYGLFADAMNEQAVQKLYSVKGRPTEKALNMNVSSFEDILKYSINTPDYLRK
EEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHH
IVDAFLPGPLTIILEASSEVPEWIHIGKSTVGFRMPNIAVTQKVIKEVGVLVGPSANLTG
HHHHHCCCCEEEEEECCCCCCHHHHCCCCHHCCCCCCHHHHHHHHHHHCEEECCCCCCCC
SKSPSFFADLSPEILENAAVAVQDDSIYGLDTTIIDLTQEKPKLLRQGAVTKAELLKKVP
CCCCCHHHCCCHHHHCCCCEEEECCCEECCCHHHEECCHHHHHHHHHCCCCHHHHHHHCC
ELGQIE
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]