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The map label for this gene is yjbM [H]

Identifier: 125623251

GI number: 125623251

Start: 373905

End: 374564

Strand: Direct

Name: yjbM [H]

Synonym: llmg_0382

Alternate gene names: 125623251

Gene position: 373905-374564 (Clockwise)

Preceding gene: 125623250

Following gene: 125623252

Centisome position: 14.78

GC content: 37.12

Gene sequence:

>660_bases
ATGTTTAATTGGGAAGAATTTCTGGACCCCTACGTCCAAACTGTCGGAGAATTAAAAATAAAATTTCGTGGTGTTCGTAA
ACAATATCTCAAGAAAGGCTTGTATTCTCCAATTGAGTTTGTTACAGGGCGCGTGAAGCGTCGAGAATCAATCAGAAATA
AAGCAAAACTCCGTGGTTATACCCGAGAAAATTTATCTGAAATGGAAGATATTGCCGGCGTTCGGGTAATGGTTCAGTTC
GTTGATGATGTCTGGGATGTTCTGGAGCTTTTACGTAAACGTAAAGATTTTAAAATAATTGAAGAGCGGGATTATATTAA
TAATCAAAAAGCCTCAGGTTATCGTTCTTATCATGTCATTATTGAATATCCGATTGATACGATTGATGGCTTCCAAATTG
TTAATGCTGAGATTCAGATTAGAACTTTGGCCATGAACTTTTGGGCAACGATTGAACACTCTCTTAATTATAAATATGGA
GGATTAATTCCTGAGGATGTCAAAGCTAGATTGACAAATGCGGCGCGTGAAGCTGCACAGCTTGATTCTGAAATGGGCGA
AATTCGGGAAGATATTCAAGAAGCACAGTTACTTTTTGATAGCCCTCAGCAAAAACAAGACTTTAAAAAAGAAAATGGTG
AAGAAAATGAACTTTGGTAA

Upstream 100 bases:

>100_bases
ATTAGATGTGATTCTAATAAAAAAGAAGTCAGAAAACGTTTTAATATTTAAATACTCAGAAAGGAGTATGTGAGGGCGAT
TGCTTTTACAAGGTGAAAAA

Downstream 100 bases:

>100_bases
AAAAGTCTGGCTAATTGGAAATTCAAGTGAGAAGTCTAAAAAAACACTCAATAAATTGAGCAAGATTTTGAAAGCTGAAC
ATTTTGTTTTTGATGATATT

Product: putative GTP pyrophosphokinase

Products: NA

Alternate protein names: (p)ppGpp synthase yjbM; Small alarmone synthase 1; SAS 1 [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MFNWEEFLDPYVQTVGELKIKFRGVRKQYLKKGLYSPIEFVTGRVKRRESIRNKAKLRGYTRENLSEMEDIAGVRVMVQF
VDDVWDVLELLRKRKDFKIIEERDYINNQKASGYRSYHVIIEYPIDTIDGFQIVNAEIQIRTLAMNFWATIEHSLNYKYG
GLIPEDVKARLTNAAREAAQLDSEMGEIREDIQEAQLLFDSPQQKQDFKKENGEENELW

Sequences:

>Translated_219_residues
MFNWEEFLDPYVQTVGELKIKFRGVRKQYLKKGLYSPIEFVTGRVKRRESIRNKAKLRGYTRENLSEMEDIAGVRVMVQF
VDDVWDVLELLRKRKDFKIIEERDYINNQKASGYRSYHVIIEYPIDTIDGFQIVNAEIQIRTLAMNFWATIEHSLNYKYG
GLIPEDVKARLTNAAREAAQLDSEMGEIREDIQEAQLLFDSPQQKQDFKKENGEENELW
>Mature_219_residues
MFNWEEFLDPYVQTVGELKIKFRGVRKQYLKKGLYSPIEFVTGRVKRRESIRNKAKLRGYTRENLSEMEDIAGVRVMVQF
VDDVWDVLELLRKRKDFKIIEERDYINNQKASGYRSYHVIIEYPIDTIDGFQIVNAEIQIRTLAMNFWATIEHSLNYKYG
GLIPEDVKARLTNAAREAAQLDSEMGEIREDIQEAQLLFDSPQQKQDFKKENGEENELW

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007685 [H]

Pfam domain/function: PF04607 RelA_SpoT [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 25910; Mature: 25910

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNWEEFLDPYVQTVGELKIKFRGVRKQYLKKGLYSPIEFVTGRVKRRESIRNKAKLRGY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
TRENLSEMEDIAGVRVMVQFVDDVWDVLELLRKRKDFKIIEERDYINNQKASGYRSYHVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEEE
IEYPIDTIDGFQIVNAEIQIRTLAMNFWATIEHSLNYKYGGLIPEDVKARLTNAAREAAQ
EEECCCCCCCCEEECCEEEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
LDSEMGEIREDIQEAQLLFDSPQQKQDFKKENGEENELW
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MFNWEEFLDPYVQTVGELKIKFRGVRKQYLKKGLYSPIEFVTGRVKRRESIRNKAKLRGY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
TRENLSEMEDIAGVRVMVQFVDDVWDVLELLRKRKDFKIIEERDYINNQKASGYRSYHVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCEEEEE
IEYPIDTIDGFQIVNAEIQIRTLAMNFWATIEHSLNYKYGGLIPEDVKARLTNAAREAAQ
EEECCCCCCCCEEECCEEEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
LDSEMGEIREDIQEAQLLFDSPQQKQDFKKENGEENELW
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]