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The map label for this gene is rgpF

Identifier: 125623094

GI number: 125623094

Start: 205995

End: 207761

Strand: Direct

Name: rgpF

Synonym: llmg_0217

Alternate gene names: NA

Gene position: 205995-207761 (Clockwise)

Preceding gene: 125623093

Following gene: 125623095

Centisome position: 8.14

GC content: 32.31

Gene sequence:

>1767_bases
ATGAACAATAAATTATTACTATACGTACATTTTAACCGAAATAACGAGTTGAGTGACCACGTTATTTACCAATTGAAACA
TTTACGACAAAATTTTGATGAAGTTTTCTTCATTTCAAATAGTTTAATGGATGAAAATGCCTTAGCTACACTGACAGGGC
AAAATCTCATTGACGGTTTTATGCAACGTGAAAATAAGGGCTATGACTTTGTTGCTTGGTCAGAAGCGATGAAACATTAT
GGATTTGAAAAACTTGCATCCTATGATTCGGTGACAATTATGAATGATACTTGTTTTGGACCAGTTTACGATTTTGAAGG
AATTTTTTCTAAGTTTAATAAAGATTCAAATGTTGATTTCTGGGGAATTACTAATAACCGAAGTCATAAAGTAAAACCAT
GGGAAGACCGTGAAGCAATTGTTTTACCAGATCATATTCAAAGTTATTTTGTTAATTACAAACAAAAAATTGTAAAAAGT
AAAGCTTTTGAAGATTTTTGGACAAATATTGAAGTTTTAGATGATGTTGTAGAAGTCATTGTAAAATATGAAACAGCAAT
GACGAAATATTTTGAAGATGCTGGCTTTAAATCAGGAGTAATTTTTGACACACGTAAAGAAGAGTGGGCAGGTATGCTTG
TCCATGATTTTTCCGTATTCAATTTACCTGAACTGTTAAAACGTCACATTCCTTTTCTAAAAATCAAAGCCTTTAGTTAT
GGTGCAGATAATATTTATACTCCTTTAGTAATTGAGCGCTTAAAACAAGAAACAACTTATCCAATAGAACTTATTGTTAA
TCACATGACAGAGGTTGATTATCCAGACCGCGAGTACATGTTGGAAGAAAAAACACTCAAACTTAGTACCGAAATAAACA
AAAAAAGTAACTTGAAAATTGCGATTCACCTTCATGCTTTTTATCTTGATTTAATCCCAGAATATCTTGATTATTTTGAT
AAATATGTTCAAAATTATGACCTTTTTATCACAACGGATACAAAAGATAAATACGAACAAATCATAAAGTCTTATCCGCT
AAACCAAATCAAAAAAGTTTTGGTAACTGGAAATAAAGGGCGAGATGTTCTGCCGTGGATGGAAATTTCAGAATTAATGG
CAGATTATGACCTTTGCGGACATTTTCATACCAAAAAATCTAAAGATAATGATTGGATTGTAGGAGAATCTTGGCGAAGA
GATATCGAATATTCATTGCTGAAACCAGCACAAGCAATTTTTCAAGAATTTGAAAAAAATCCGAAACTTGGCTTGATGAT
TGCGGACGTTCCTTCATTTTTCGAACATTTTTACGGACCAACTTATATTACTGAACGTGATATTTGGCCAGATATGGAAG
AAATATGGAAGAAAATTAACTTTGAAAATCCGAGAGGCTTGAAACAAAAAGATAGTTATGTCATGAGTTATGGAACAATG
ATTTGGTATCGTCCACAAGCTTTGAATAACTTACTAAAAGTTGATATTGAAGCAGCGGTCCCAGAAGAACCTCTTCCCTA
TAATAGTATTTTACACGCTTTTGAACGTTTACTTGTTTATACTTCATGGGCAAATGGATATGATTTCCGAATTTCTCAAA
TCCAAACAAATAATGGATTTGTTGCTAATTTTTCGGCAAATAGACTCTTGCGTTCCGTCGAAACGGACCTAACACAAACG
AAGCTGCGCGACTTAGTTAAAATGATTTTTAAGAAAATTAAAGTAATTATCGCCTACCGTTTGAAAATAGGCAAAAAAAA
TAAGTAA

Upstream 100 bases:

>100_bases
GATACCCATATTGCTAATCAAGAAAAAGTGATTTCTGAAATTACTAATTCTTTTGCATATCGGCTAATAAATAAAGTGAT
ACATCCCTTAGGAAAGAAGA

Downstream 100 bases:

>100_bases
ATTTGTGGTAAAATTTATATTAGAAAAATGTACATAAAGAAGTACAAAATTAATGTTTATTTATAAGGAGAACTTGGAAC
AGTGTCCGATGACAAAAAAA

Product: alpha-L-Rha alpha-1,2-L-rhamnosyltransferase RgpF

Products: NA

Alternate protein names: Polysaccharide Biosynthesis Protein; Rhamnan Synthesis F; Lipopolysaccharide Biosynthesis Protein-Like Protein; Glycosyltransferase; Rhamnan Synthesis Protein F Family Protein; Rhamnosyltransferase; Alpha-L-Rha Alpha-1 2-L-Rhamnosyltransferase RgpF; Rhamnan Synthesis Protein F; RgpFc Protein; Lipopolysaccharide Biosynthesis Protein-Like; Glycosyltransferase Fusion Protein; Family 2 Glycosyl Transferase; Glycosyl Transferase

Number of amino acids: Translated: 588; Mature: 588

Protein sequence:

>588_residues
MNNKLLLYVHFNRNNELSDHVIYQLKHLRQNFDEVFFISNSLMDENALATLTGQNLIDGFMQRENKGYDFVAWSEAMKHY
GFEKLASYDSVTIMNDTCFGPVYDFEGIFSKFNKDSNVDFWGITNNRSHKVKPWEDREAIVLPDHIQSYFVNYKQKIVKS
KAFEDFWTNIEVLDDVVEVIVKYETAMTKYFEDAGFKSGVIFDTRKEEWAGMLVHDFSVFNLPELLKRHIPFLKIKAFSY
GADNIYTPLVIERLKQETTYPIELIVNHMTEVDYPDREYMLEEKTLKLSTEINKKSNLKIAIHLHAFYLDLIPEYLDYFD
KYVQNYDLFITTDTKDKYEQIIKSYPLNQIKKVLVTGNKGRDVLPWMEISELMADYDLCGHFHTKKSKDNDWIVGESWRR
DIEYSLLKPAQAIFQEFEKNPKLGLMIADVPSFFEHFYGPTYITERDIWPDMEEIWKKINFENPRGLKQKDSYVMSYGTM
IWYRPQALNNLLKVDIEAAVPEEPLPYNSILHAFERLLVYTSWANGYDFRISQIQTNNGFVANFSANRLLRSVETDLTQT
KLRDLVKMIFKKIKVIIAYRLKIGKKNK

Sequences:

>Translated_588_residues
MNNKLLLYVHFNRNNELSDHVIYQLKHLRQNFDEVFFISNSLMDENALATLTGQNLIDGFMQRENKGYDFVAWSEAMKHY
GFEKLASYDSVTIMNDTCFGPVYDFEGIFSKFNKDSNVDFWGITNNRSHKVKPWEDREAIVLPDHIQSYFVNYKQKIVKS
KAFEDFWTNIEVLDDVVEVIVKYETAMTKYFEDAGFKSGVIFDTRKEEWAGMLVHDFSVFNLPELLKRHIPFLKIKAFSY
GADNIYTPLVIERLKQETTYPIELIVNHMTEVDYPDREYMLEEKTLKLSTEINKKSNLKIAIHLHAFYLDLIPEYLDYFD
KYVQNYDLFITTDTKDKYEQIIKSYPLNQIKKVLVTGNKGRDVLPWMEISELMADYDLCGHFHTKKSKDNDWIVGESWRR
DIEYSLLKPAQAIFQEFEKNPKLGLMIADVPSFFEHFYGPTYITERDIWPDMEEIWKKINFENPRGLKQKDSYVMSYGTM
IWYRPQALNNLLKVDIEAAVPEEPLPYNSILHAFERLLVYTSWANGYDFRISQIQTNNGFVANFSANRLLRSVETDLTQT
KLRDLVKMIFKKIKVIIAYRLKIGKKNK
>Mature_588_residues
MNNKLLLYVHFNRNNELSDHVIYQLKHLRQNFDEVFFISNSLMDENALATLTGQNLIDGFMQRENKGYDFVAWSEAMKHY
GFEKLASYDSVTIMNDTCFGPVYDFEGIFSKFNKDSNVDFWGITNNRSHKVKPWEDREAIVLPDHIQSYFVNYKQKIVKS
KAFEDFWTNIEVLDDVVEVIVKYETAMTKYFEDAGFKSGVIFDTRKEEWAGMLVHDFSVFNLPELLKRHIPFLKIKAFSY
GADNIYTPLVIERLKQETTYPIELIVNHMTEVDYPDREYMLEEKTLKLSTEINKKSNLKIAIHLHAFYLDLIPEYLDYFD
KYVQNYDLFITTDTKDKYEQIIKSYPLNQIKKVLVTGNKGRDVLPWMEISELMADYDLCGHFHTKKSKDNDWIVGESWRR
DIEYSLLKPAQAIFQEFEKNPKLGLMIADVPSFFEHFYGPTYITERDIWPDMEEIWKKINFENPRGLKQKDSYVMSYGTM
IWYRPQALNNLLKVDIEAAVPEEPLPYNSILHAFERLLVYTSWANGYDFRISQIQTNNGFVANFSANRLLRSVETDLTQT
KLRDLVKMIFKKIKVIIAYRLKIGKKNK

Specific function: Unknown

COG id: COG3754

COG function: function code M; Lipopolysaccharide biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69461; Mature: 69461

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKLLLYVHFNRNNELSDHVIYQLKHLRQNFDEVFFISNSLMDENALATLTGQNLIDGF
CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCHHEEEEECCCCCCCCEEEECCHHHHHHH
MQRENKGYDFVAWSEAMKHYGFEKLASYDSVTIMNDTCFGPVYDFEGIFSKFNKDSNVDF
HHHCCCCCCEEEHHHHHHHCCHHHHHCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCEE
WGITNNRSHKVKPWEDREAIVLPDHIQSYFVNYKQKIVKSKAFEDFWTNIEVLDDVVEVI
EEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
VKYETAMTKYFEDAGFKSGVIFDTRKEEWAGMLVHDFSVFNLPELLKRHIPFLKIKAFSY
HHHHHHHHHHHHHCCCCCCEEEECCHHHHCCEEEECCCCCCHHHHHHHCCCEEEEEEEEC
GADNIYTPLVIERLKQETTYPIELIVNHMTEVDYPDREYMLEEKTLKLSTEINKKSNLKI
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHEEEEECCCCCCCCEE
AIHLHAFYLDLIPEYLDYFDKYVQNYDLFITTDTKDKYEQIIKSYPLNQIKKVLVTGNKG
EEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCHHHHHHHEEECCCC
RDVLPWMEISELMADYDLCGHFHTKKSKDNDWIVGESWRRDIEYSLLKPAQAIFQEFEKN
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHCCHHHHHHHHHHHHHHHHCC
PKLGLMIADVPSFFEHFYGPTYITERDIWPDMEEIWKKINFENPRGLKQKDSYVMSYGTM
CCEEEEEECHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCHHCCCCEEECCE
IWYRPQALNNLLKVDIEAAVPEEPLPYNSILHAFERLLVYTSWANGYDFRISQIQTNNGF
EEECHHHHHHHHEEEEHHCCCCCCCCHHHHHHHHHHHHEEECCCCCCEEEEEEEECCCCE
VANFSANRLLRSVETDLTQTKLRDLVKMIFKKIKVIIAYRLKIGKKNK
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNNKLLLYVHFNRNNELSDHVIYQLKHLRQNFDEVFFISNSLMDENALATLTGQNLIDGF
CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCHHEEEEECCCCCCCCEEEECCHHHHHHH
MQRENKGYDFVAWSEAMKHYGFEKLASYDSVTIMNDTCFGPVYDFEGIFSKFNKDSNVDF
HHHCCCCCCEEEHHHHHHHCCHHHHHCCCCEEEECCCCCCCCCCHHHHHHHCCCCCCCEE
WGITNNRSHKVKPWEDREAIVLPDHIQSYFVNYKQKIVKSKAFEDFWTNIEVLDDVVEVI
EEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
VKYETAMTKYFEDAGFKSGVIFDTRKEEWAGMLVHDFSVFNLPELLKRHIPFLKIKAFSY
HHHHHHHHHHHHHCCCCCCEEEECCHHHHCCEEEECCCCCCHHHHHHHCCCEEEEEEEEC
GADNIYTPLVIERLKQETTYPIELIVNHMTEVDYPDREYMLEEKTLKLSTEINKKSNLKI
CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHEEEEECCCCCCCCEE
AIHLHAFYLDLIPEYLDYFDKYVQNYDLFITTDTKDKYEQIIKSYPLNQIKKVLVTGNKG
EEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCHHHHHHHEEECCCC
RDVLPWMEISELMADYDLCGHFHTKKSKDNDWIVGESWRRDIEYSLLKPAQAIFQEFEKN
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHHHCCHHHHHHHHHHHHHHHHCC
PKLGLMIADVPSFFEHFYGPTYITERDIWPDMEEIWKKINFENPRGLKQKDSYVMSYGTM
CCEEEEEECHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCHHCCCCEEECCE
IWYRPQALNNLLKVDIEAAVPEEPLPYNSILHAFERLLVYTSWANGYDFRISQIQTNNGF
EEECHHHHHHHHEEEEHHCCCCCCCCHHHHHHHHHHHHEEECCCCCCEEEEEEEECCCCE
VANFSANRLLRSVETDLTQTKLRDLVKMIFKKIKVIIAYRLKIGKKNK
EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA