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The map label for this gene is jag [H]

Identifier: 125623023

GI number: 125623023

Start: 140033

End: 140947

Strand: Direct

Name: jag [H]

Synonym: llmg_0144

Alternate gene names: 125623023

Gene position: 140033-140947 (Clockwise)

Preceding gene: 125623022

Following gene: 125623024

Centisome position: 5.54

GC content: 38.69

Gene sequence:

>915_bases
ATGGCTATTTTTACTGGTGAAACGGTCGAAGATGCAATTGATCGTGGTTTAAATCGATTAGGCGTTAAGCGCGAGAATGT
TCATATTCATATTGAACAAAAAGAGAAAAAAGGTTTCTTGGGATTTGGAAAGAAACGGGCTCGGGTTAATATCGAGCCAA
TCCATGAGGAAACGGTGCGTAAAGCTGATCATTTGGCTGAACGTGGTGTAGATGATACAATTAATCTTGGCGTTCCTAAA
TCACAATCCGCAATGGAAGCAACGCTTGAGCTAAGTCAAGTTGTTAAAGCGGTTCGTGCGGCTGAGAGAGAACAAAACGG
CGAAATCACTGAAGAAGAGCGTAATGCGATTATTGAAGTGGCCAAAAAAACAGTTGTTCAAAATCGCCAAGGAACAACAG
ATCTTTCTGATGTTGTTGCAGCTGTTAAAGAAGAAGTTGAAGCTAAAAAAGAAGTTTCAAATGAAGAAGAAAAAATTGCT
TCAAAAATTTCAAGCTATTTGACCACGATTACCCAAGAAATGGGAATTGCAACTCGTGTTTCAGTTTCTCGTGATGGGAA
TTTGACGGTCTTTAATTTGACTTCTAACCATGATGCTCTACTTATTGGGAAGCATGGGAAAATTTTGCAAAGTTTACAGA
TTTTAGCAAAAGCCTATGCAAACAGTATTTTAAATACACGAATGAATGTCGCTGTAAACGTTGGAGATTATCATGAAAAA
CGGAAAGCTTACATTGTAAGCTTGGCTCACCGGGCAGCAGAGCGTGCGCGTGGTGGTGAAACTGTTTATATCAATGATTT
ACAATCTAACGAGCGTAAAATTGTTCACACGATTATTGGTCAAGAAAATGGTGTGTCAAGTCATTCAGAAGGGCAAGAAT
ATAATCGCTATATTGTTGTCTCTAAAGAGATTTAG

Upstream 100 bases:

>100_bases
AAGAAAAAAATAAAAAATACCATTGGCAGTTTTTATTTTAATTGGAAGTTGTGCTAGAAATTGTCAATAGGCTTTATCAT
ATGACAGGAGTAGTTTGATT

Downstream 100 bases:

>100_bases
CCTTGACAAAAGACCTTTCATAGTGTAAAATTGTAAGGTATGCTTTTAATAGCAGTAAACTAAGATGAAAGGAACACCGA
AAAGGTGGAGCTACTTTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MAIFTGETVEDAIDRGLNRLGVKRENVHIHIEQKEKKGFLGFGKKRARVNIEPIHEETVRKADHLAERGVDDTINLGVPK
SQSAMEATLELSQVVKAVRAAEREQNGEITEEERNAIIEVAKKTVVQNRQGTTDLSDVVAAVKEEVEAKKEVSNEEEKIA
SKISSYLTTITQEMGIATRVSVSRDGNLTVFNLTSNHDALLIGKHGKILQSLQILAKAYANSILNTRMNVAVNVGDYHEK
RKAYIVSLAHRAAERARGGETVYINDLQSNERKIVHTIIGQENGVSSHSEGQEYNRYIVVSKEI

Sequences:

>Translated_304_residues
MAIFTGETVEDAIDRGLNRLGVKRENVHIHIEQKEKKGFLGFGKKRARVNIEPIHEETVRKADHLAERGVDDTINLGVPK
SQSAMEATLELSQVVKAVRAAEREQNGEITEEERNAIIEVAKKTVVQNRQGTTDLSDVVAAVKEEVEAKKEVSNEEEKIA
SKISSYLTTITQEMGIATRVSVSRDGNLTVFNLTSNHDALLIGKHGKILQSLQILAKAYANSILNTRMNVAVNVGDYHEK
RKAYIVSLAHRAAERARGGETVYINDLQSNERKIVHTIIGQENGVSSHSEGQEYNRYIVVSKEI
>Mature_303_residues
AIFTGETVEDAIDRGLNRLGVKRENVHIHIEQKEKKGFLGFGKKRARVNIEPIHEETVRKADHLAERGVDDTINLGVPKS
QSAMEATLELSQVVKAVRAAEREQNGEITEEERNAIIEVAKKTVVQNRQGTTDLSDVVAAVKEEVEAKKEVSNEEEKIAS
KISSYLTTITQEMGIATRVSVSRDGNLTVFNLTSNHDALLIGKHGKILQSLQILAKAYANSILNTRMNVAVNVGDYHEKR
KAYIVSLAHRAAERARGGETVYINDLQSNERKIVHTIIGQENGVSSHSEGQEYNRYIVVSKEI

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 33761; Mature: 33629

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIFTGETVEDAIDRGLNRLGVKRENVHIHIEQKEKKGFLGFGKKRARVNIEPIHEETVR
CCEECCCHHHHHHHHHHHHHCCEECCEEEEEEECCCCCCCCCCCCCCEEECCCCHHHHHH
KADHLAERGVDDTINLGVPKSQSAMEATLELSQVVKAVRAAEREQNGEITEEERNAIIEV
HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
AKKTVVQNRQGTTDLSDVVAAVKEEVEAKKEVSNEEEKIASKISSYLTTITQEMGIATRV
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEE
SVSRDGNLTVFNLTSNHDALLIGKHGKILQSLQILAKAYANSILNTRMNVAVNVGDYHEK
EECCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHH
RKAYIVSLAHRAAERARGGETVYINDLQSNERKIVHTIIGQENGVSSHSEGQEYNRYIVV
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEE
SKEI
EECC
>Mature Secondary Structure 
AIFTGETVEDAIDRGLNRLGVKRENVHIHIEQKEKKGFLGFGKKRARVNIEPIHEETVR
CEECCCHHHHHHHHHHHHHCCEECCEEEEEEECCCCCCCCCCCCCCEEECCCCHHHHHH
KADHLAERGVDDTINLGVPKSQSAMEATLELSQVVKAVRAAEREQNGEITEEERNAIIEV
HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
AKKTVVQNRQGTTDLSDVVAAVKEEVEAKKEVSNEEEKIASKISSYLTTITQEMGIATRV
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEE
SVSRDGNLTVFNLTSNHDALLIGKHGKILQSLQILAKAYANSILNTRMNVAVNVGDYHEK
EECCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHH
RKAYIVSLAHRAAERARGGETVYINDLQSNERKIVHTIIGQENGVSSHSEGQEYNRYIVV
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEE
SKEI
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]