| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124486446
Identifier: 124486446
GI number: 124486446
Start: 1660866
End: 1661528
Strand: Reverse
Name: 124486446
Synonym: Mlab_1634
Alternate gene names: NA
Gene position: 1661528-1660866 (Counterclockwise)
Preceding gene: 124486448
Following gene: 124486445
Centisome position: 92.05
GC content: 52.79
Gene sequence:
>663_bases ATGTGTTGTTTTCCAGAACACAGATATTATAGGATTCGGAGCCAATGTTATATTCATCAGTCAATGGACATCTTTTCGCG TTCGGCCTCCTCCTCCCGGGAATTTATCGAAGAGACGGTCACGGCTCTTCTTTCTGCCGAGTCGAACCAGGCCGCGGCCG AGATCATCGGTCGGGCTCTCTCTGCCTACACGGTATTCGATCTCCAGTATATCGGCGGATATCTGAAGTGCGAAGCGGAA CGCCTCCCCGATCCGTACCGTCGGTTGTATCGGCCGTACTGCATGGATCTCTTCGATCAGTATCATGCATTCATGCAGGA TTTCAGGCCGGGTATTGTTTGTCATGGTCCGTTGCCCGATCTTGATCTCTGGAAAAAATACTGGACGGGTGTCCCCGAAT ACTGTTTTCAGGATGCGGTTTCTTCACAGAGTCCAAGGCCGGTCCAGAACCACCCCTTGTCCAAATTCTTCTACCGTCTG GTGTTTGCCTACGTCATGTTCGTAAAAGGGGGCTGCGGTCATCCGGTCGGCATGCCGTTTCCGGGAGGTTTTCGCATCCG GCAGGCGGGCGACATCGTCTACTGCCCGATTCGTGATCGGGAAAAGGATCTCCCGCAGGCGTTATGTAATTACTGCCCGG CAAAACAGGATCCCGATTTTTGA
Upstream 100 bases:
>100_bases CTGGCCACGGTCTCGAAAGCGACAAGACCAATGATGACGACTACAGCGTAGAGAATGTCCATGAAAACTACACTGTAGTT TGACGTATCGGGATATAAAC
Downstream 100 bases:
>100_bases AATCCGAAGGCATTAAGAGAAATTCTTTTTACTAGCAGAACCTAAATTCAAGATACTTATGTTGGAAGAACTCATATCCA CCATCGAATTTCAGATGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 220; Mature: 220
Protein sequence:
>220_residues MCCFPEHRYYRIRSQCYIHQSMDIFSRSASSSREFIEETVTALLSAESNQAAAEIIGRALSAYTVFDLQYIGGYLKCEAE RLPDPYRRLYRPYCMDLFDQYHAFMQDFRPGIVCHGPLPDLDLWKKYWTGVPEYCFQDAVSSQSPRPVQNHPLSKFFYRL VFAYVMFVKGGCGHPVGMPFPGGFRIRQAGDIVYCPIRDREKDLPQALCNYCPAKQDPDF
Sequences:
>Translated_220_residues MCCFPEHRYYRIRSQCYIHQSMDIFSRSASSSREFIEETVTALLSAESNQAAAEIIGRALSAYTVFDLQYIGGYLKCEAE RLPDPYRRLYRPYCMDLFDQYHAFMQDFRPGIVCHGPLPDLDLWKKYWTGVPEYCFQDAVSSQSPRPVQNHPLSKFFYRL VFAYVMFVKGGCGHPVGMPFPGGFRIRQAGDIVYCPIRDREKDLPQALCNYCPAKQDPDF >Mature_220_residues MCCFPEHRYYRIRSQCYIHQSMDIFSRSASSSREFIEETVTALLSAESNQAAAEIIGRALSAYTVFDLQYIGGYLKCEAE RLPDPYRRLYRPYCMDLFDQYHAFMQDFRPGIVCHGPLPDLDLWKKYWTGVPEYCFQDAVSSQSPRPVQNHPLSKFFYRL VFAYVMFVKGGCGHPVGMPFPGGFRIRQAGDIVYCPIRDREKDLPQALCNYCPAKQDPDF
Specific function: Unknown
COG id: COG4066
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0305 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019215 - InterPro: IPR009182 [H]
Pfam domain/function: PF09888 DUF2115 [H]
EC number: NA
Molecular weight: Translated: 25500; Mature: 25500
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 7.7 %Cys+Met (Translated Protein) 5.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 7.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCCFPEHRYYRIRSQCYIHQSMDIFSRSASSSREFIEETVTALLSAESNQAAAEIIGRAL CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH SAYTVFDLQYIGGYLKCEAERLPDPYRRLYRPYCMDLFDQYHAFMQDFRPGIVCHGPLPD HHHHHHHHHHHCCHHEECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC LDLWKKYWTGVPEYCFQDAVSSQSPRPVQNHPLSKFFYRLVFAYVMFVKGGCGHPVGMPF HHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC PGGFRIRQAGDIVYCPIRDREKDLPQALCNYCPAKQDPDF CCCCEEEECCCEEECCCCCCHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MCCFPEHRYYRIRSQCYIHQSMDIFSRSASSSREFIEETVTALLSAESNQAAAEIIGRAL CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH SAYTVFDLQYIGGYLKCEAERLPDPYRRLYRPYCMDLFDQYHAFMQDFRPGIVCHGPLPD HHHHHHHHHHHCCHHEECHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC LDLWKKYWTGVPEYCFQDAVSSQSPRPVQNHPLSKFFYRLVFAYVMFVKGGCGHPVGMPF HHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC PGGFRIRQAGDIVYCPIRDREKDLPQALCNYCPAKQDPDF CCCCEEEECCCEEECCCCCCHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]