Click here to switch to the map view.

The map label for this gene is dbpA [C]

Identifier: 124486390

GI number: 124486390

Start: 1605872

End: 1608583

Strand: Reverse

Name: dbpA [C]

Synonym: Mlab_1575

Alternate gene names: 124486390

Gene position: 1608583-1605872 (Counterclockwise)

Preceding gene: 124486391

Following gene: 124486380

Centisome position: 89.12

GC content: 53.1

Gene sequence:

>2712_bases
GTGACGACCATCGTCCAACCCTGGAAAAAAGGGTATAAAGTCTATTTTTGTGACGACGCAAAGGCAGGCAAAATCAAACA
TGTAGGGACCGTCGAACTCGAAGAGACCTCCAAGGGGATGCGCCCGTCTGAGTTTTTCGTCAGACGTCCTGGGACATCCC
ATGCCGAGAAGACGCCGACAAAGGAGTTCATCACGGTTCTTCGTGCAAACGGTCCGATCAAACTCACGCAGACGATGCCG
GCGTTTCAGGATTTTCTGCGCGGGATGCAGTTATCCTGGGAGACAACGACGCTTTGCCGTACCTGTCTCTTTGACGATCG
TATAACTCCTCTTACCGAAGAGACGCGGATCAGATGCGGGCAGGAGTATGTCTGTCTTGATTGTGCGAAGCGTGAGCTCC
GCCGCGAACTCGGTCATATCAAACATCTGGGAAAACGAACCCAGCTCCATATCGAAAATCTTCTGGAAGAATACCGCGAT
CTGGACATGGTGCTCGCGATTCTTCAGCCCGAATCTCTCGATACCAAGAAAACGATGTTCGACCGGCTCGAAGCGCATGA
TCAGACGCCGACCGAACGTATCGAAAATCTACCGCTGCCCCGCAAATTCGTCGATCTCTGCGGTGTTGAGACACTCATGC
CCGCCCAGCAGCGTGCGGTCGAGTCGGGTCTTCTGTACGGAAAAGATCTGCTCGTTGTTGCGGCTACTGCAAGCGGCAAG
ACCTTCATCGGAGAGATGGCGGGGCTGAAAAATTATATCGAAAAACGCGGGAGAATGCTTTTCCTGGTCCCTCTCGTCGC
TCTTGCGAACCAGAAGTATGACAGGTTCTCTGAAAAATACAAGTCAGTTACCCAAACCTCGATAATGACCGGTGTTTCCC
GGGTGAATCTGCCGGAAACACGCCCGGTAGGAAACCGCGGGGCAGGCGGCGGGATCGTTGTCGGAACCTACGAGGGTATG
GACAATCTCTTGAGAAAGGGCATGCCGGTCAGCAATATTGGAACAGTCGTGATCGACGAGGTCCAGATGCTCGAAGATCC
TGAGCGTGGACACCGTCTCGACGGGCTGATCGCGAGACTGAAATACGTCGCGCCCAAAGCCCAGTTCCTCTATCTTTCAG
CAACGATCGGTTCACCGAACCTTCTCGCAAAAAAACTGAACGCCGCTCTTGTTTCCTATGCAGACCGTCCGGTTGCTCTG
GAACGCCATCTGATTTTTACGGAAAAAGACGGGAAGATCCCGTTCATCAAAAAACTGGTGTTCGAGGAGTTCAACAAGAC
TTCTTCCAAGGGATACAAAGGTCAGACGATAGTTTTCACGAATGCACGGAGCAGGTGTCATACGATCGCCGAGGCAATCG
GCGGAATGGCTGCCCCCTATCACGCCGGACTTACTTCCCAGGAACGCCGGGCAGTTGAACGGCAGTTCGAGGAAGGAAAA
CTTGCCTGTGTTGTAACGACCGCGGCACTGGCTGCCGGTGTGGATTTTCCTGCCAGTCAGGTCATCTTCGACGCTCTCGC
GATGGGAATCGACTGGCTCTCCGTTCAGGAGTTCCATCAGATGATGGGTCGTGCCGGTCGACCGGATTTCCATGATCTTG
GACGTGTTGTTGTTCTCGCCGAACCCGGGGTCTCGTATTCGCGTGAAACGAAACTGACCGAGGAGGAAGTTGCCATCCAG
CTTCTCAAAGGAGATATGGAAGAGGTCTCTCCGGTATACGACATCGAGGAAACATCCGAAGAGTTTGCGGCGAACGCCAT
AACCTGCCGCGGCCGCGAGGCTGACATCATCACCGTTGGAAACAGTATGGTCGGTGTGGGTGACGATCCGATCCAGGAAC
TTCTCAAACATAAACTTGTCAGAAAGTCAGGAGGTTTCCTGGAACTTTCCCCGCTTGGAAAAGTTATGGCCGAACATTTC
ATCGGCATGGAGCGGCTCTTGGAGATCGACAAACTTGTCCGCGTAATGGACGATCCTCTGGAAATGATCGCCGAACTTTT
CTGCATGGAAGAGGAACGGGAAAAAGAAAAACGGAGGGTCGACCGCCGCTCTACCGAGAAAAAAGAGTCTGCATGGATCG
GTGACAAAAAAGCCTCTGCCAAACCCGATTCCGAGCCTGCCTGGGTCGTGAAAAAGAAAGAGATTCATGCGGTGGAAAAG
CATGCTCACGATGATGCACGGCGCAAAAAGGCCGGGTCCCGTAAACTCCGCCGCGAAGAGGACGAAGTTGAGGTGGCGAA
GCCTCCCCGCCGGGCGAGCAAGGAGATGGAAGACCGTGTCGAACGCAAGAAACGCGAGGCTTCCCAGTTTATTCCTCCAC
CGAAGCGAAAACAGCGTGAAGGCACAGGTCCTGGGGTTTCCGGCAAGGGATCCAAAACCGGTTCTTCCGGTGATCCGGTC
AATATAATTGAGGGTGCCGTCGATCTTCGTCGTGCCGGCAAGTATGACGAGGCATTAAAGATCCTCGGCAATTATGTTGC
CGATAATCCAAAAGACAGCCGTGCCCTTGTTGAGCTGGGAAAGGTGTATGACCTTCGAAACGAACGGGACACGGCATATT
TGTGTTATCAGAAGGCTGCCGCGGCTAATACCCAGAACCGGGAAGCAATCGACAGAATGAACGCATTCCTTATCGGGATC
ACGGTGGATATCGATAATGATGCCGCTGACTCTGGAAAACAGCCGGCTGTTGTGAAAAAGAAAAAAGAATAA

Upstream 100 bases:

>100_bases
TGTCTGATCCTGGTCGTTGATGAGGAGTTCACCGATTTCCTGAAACGTCTGGAAACCGCGGGTCTTTCCTATACGATCCA
CGAACTGGTGACAGAATAAC

Downstream 100 bases:

>100_bases
TATTTTCTCTAATTTTTTGTATGTTCCATCCTCTCTGCGTGACTCATTTTGGCGAGTGAGATGACTTTATCCAGATCAAG
ACCGCAGATTTTGGCAAATC

Product: NADPH-dependent F420 reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 903; Mature: 902

Protein sequence:

>903_residues
MTTIVQPWKKGYKVYFCDDAKAGKIKHVGTVELEETSKGMRPSEFFVRRPGTSHAEKTPTKEFITVLRANGPIKLTQTMP
AFQDFLRGMQLSWETTTLCRTCLFDDRITPLTEETRIRCGQEYVCLDCAKRELRRELGHIKHLGKRTQLHIENLLEEYRD
LDMVLAILQPESLDTKKTMFDRLEAHDQTPTERIENLPLPRKFVDLCGVETLMPAQQRAVESGLLYGKDLLVVAATASGK
TFIGEMAGLKNYIEKRGRMLFLVPLVALANQKYDRFSEKYKSVTQTSIMTGVSRVNLPETRPVGNRGAGGGIVVGTYEGM
DNLLRKGMPVSNIGTVVIDEVQMLEDPERGHRLDGLIARLKYVAPKAQFLYLSATIGSPNLLAKKLNAALVSYADRPVAL
ERHLIFTEKDGKIPFIKKLVFEEFNKTSSKGYKGQTIVFTNARSRCHTIAEAIGGMAAPYHAGLTSQERRAVERQFEEGK
LACVVTTAALAAGVDFPASQVIFDALAMGIDWLSVQEFHQMMGRAGRPDFHDLGRVVVLAEPGVSYSRETKLTEEEVAIQ
LLKGDMEEVSPVYDIEETSEEFAANAITCRGREADIITVGNSMVGVGDDPIQELLKHKLVRKSGGFLELSPLGKVMAEHF
IGMERLLEIDKLVRVMDDPLEMIAELFCMEEEREKEKRRVDRRSTEKKESAWIGDKKASAKPDSEPAWVVKKKEIHAVEK
HAHDDARRKKAGSRKLRREEDEVEVAKPPRRASKEMEDRVERKKREASQFIPPPKRKQREGTGPGVSGKGSKTGSSGDPV
NIIEGAVDLRRAGKYDEALKILGNYVADNPKDSRALVELGKVYDLRNERDTAYLCYQKAAAANTQNREAIDRMNAFLIGI
TVDIDNDAADSGKQPAVVKKKKE

Sequences:

>Translated_903_residues
MTTIVQPWKKGYKVYFCDDAKAGKIKHVGTVELEETSKGMRPSEFFVRRPGTSHAEKTPTKEFITVLRANGPIKLTQTMP
AFQDFLRGMQLSWETTTLCRTCLFDDRITPLTEETRIRCGQEYVCLDCAKRELRRELGHIKHLGKRTQLHIENLLEEYRD
LDMVLAILQPESLDTKKTMFDRLEAHDQTPTERIENLPLPRKFVDLCGVETLMPAQQRAVESGLLYGKDLLVVAATASGK
TFIGEMAGLKNYIEKRGRMLFLVPLVALANQKYDRFSEKYKSVTQTSIMTGVSRVNLPETRPVGNRGAGGGIVVGTYEGM
DNLLRKGMPVSNIGTVVIDEVQMLEDPERGHRLDGLIARLKYVAPKAQFLYLSATIGSPNLLAKKLNAALVSYADRPVAL
ERHLIFTEKDGKIPFIKKLVFEEFNKTSSKGYKGQTIVFTNARSRCHTIAEAIGGMAAPYHAGLTSQERRAVERQFEEGK
LACVVTTAALAAGVDFPASQVIFDALAMGIDWLSVQEFHQMMGRAGRPDFHDLGRVVVLAEPGVSYSRETKLTEEEVAIQ
LLKGDMEEVSPVYDIEETSEEFAANAITCRGREADIITVGNSMVGVGDDPIQELLKHKLVRKSGGFLELSPLGKVMAEHF
IGMERLLEIDKLVRVMDDPLEMIAELFCMEEEREKEKRRVDRRSTEKKESAWIGDKKASAKPDSEPAWVVKKKEIHAVEK
HAHDDARRKKAGSRKLRREEDEVEVAKPPRRASKEMEDRVERKKREASQFIPPPKRKQREGTGPGVSGKGSKTGSSGDPV
NIIEGAVDLRRAGKYDEALKILGNYVADNPKDSRALVELGKVYDLRNERDTAYLCYQKAAAANTQNREAIDRMNAFLIGI
TVDIDNDAADSGKQPAVVKKKKE
>Mature_902_residues
TTIVQPWKKGYKVYFCDDAKAGKIKHVGTVELEETSKGMRPSEFFVRRPGTSHAEKTPTKEFITVLRANGPIKLTQTMPA
FQDFLRGMQLSWETTTLCRTCLFDDRITPLTEETRIRCGQEYVCLDCAKRELRRELGHIKHLGKRTQLHIENLLEEYRDL
DMVLAILQPESLDTKKTMFDRLEAHDQTPTERIENLPLPRKFVDLCGVETLMPAQQRAVESGLLYGKDLLVVAATASGKT
FIGEMAGLKNYIEKRGRMLFLVPLVALANQKYDRFSEKYKSVTQTSIMTGVSRVNLPETRPVGNRGAGGGIVVGTYEGMD
NLLRKGMPVSNIGTVVIDEVQMLEDPERGHRLDGLIARLKYVAPKAQFLYLSATIGSPNLLAKKLNAALVSYADRPVALE
RHLIFTEKDGKIPFIKKLVFEEFNKTSSKGYKGQTIVFTNARSRCHTIAEAIGGMAAPYHAGLTSQERRAVERQFEEGKL
ACVVTTAALAAGVDFPASQVIFDALAMGIDWLSVQEFHQMMGRAGRPDFHDLGRVVVLAEPGVSYSRETKLTEEEVAIQL
LKGDMEEVSPVYDIEETSEEFAANAITCRGREADIITVGNSMVGVGDDPIQELLKHKLVRKSGGFLELSPLGKVMAEHFI
GMERLLEIDKLVRVMDDPLEMIAELFCMEEEREKEKRRVDRRSTEKKESAWIGDKKASAKPDSEPAWVVKKKEIHAVEKH
AHDDARRKKAGSRKLRREEDEVEVAKPPRRASKEMEDRVERKKREASQFIPPPKRKQREGTGPGVSGKGSKTGSSGDPVN
IIEGAVDLRRAGKYDEALKILGNYVADNPKDSRALVELGKVYDLRNERDTAYLCYQKAAAANTQNREAIDRMNAFLIGIT
VDIDNDAADSGKQPAVVKKKKE

Specific function: Has A Helix-Destabilizing Activity, Which Is Not Coupled To The Atpase Activity. Can Unwind The 23s Rrna As Well As 16s Rrna. Exhibits An RNA-Dependent Atpase Activity, Specifically Stimulated By Bacterial 23s Rrna. Could Play A Major Role In Ribosome Ass

COG id: COG1202

COG function: function code R; Superfamily II helicase, archaea-specific

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI139394648, Length=212, Percent_Identity=28.7735849056604, Blast_Score=75, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71995032, Length=379, Percent_Identity=24.802110817942, Blast_Score=94, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71995036, Length=96, Percent_Identity=37.5, Blast_Score=66, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI9755332, Length=545, Percent_Identity=23.1192660550459, Blast_Score=105, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6322411, Length=251, Percent_Identity=28.2868525896414, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR014014 [H]

Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]

EC number: 3.6.1.-

Molecular weight: Translated: 101054; Mature: 100923

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION ; PS00238 OPSIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIVQPWKKGYKVYFCDDAKAGKIKHVGTVELEETSKGMRPSEFFVRRPGTSHAEKTPT
CCCCCCCHHCCCEEEEECCCCCCCEECCCEEEEHHHCCCCCCCHHEEECCCCCCCCCCCH
KEFITVLRANGPIKLTQTMPAFQDFLRGMQLSWETTTLCRTCLFDDRITPLTEETRIRCG
HHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCC
QEYVCLDCAKRELRRELGHIKHLGKRTQLHIENLLEEYRDLDMVLAILQPESLDTKKTMF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
DRLEAHDQTPTERIENLPLPRKFVDLCGVETLMPAQQRAVESGLLYGKDLLVVAATASGK
HHHHHCCCCHHHHHHCCCCCHHHHHHHCHHHHCHHHHHHHHHCCCCCCCEEEEEEECCCC
TFIGEMAGLKNYIEKRGRMLFLVPLVALANQKYDRFSEKYKSVTQTSIMTGVSRVNLPET
HHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPVGNRGAGGGIVVGTYEGMDNLLRKGMPVSNIGTVVIDEVQMLEDPERGHRLDGLIARL
CCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
KYVAPKAQFLYLSATIGSPNLLAKKLNAALVSYADRPVALERHLIFTEKDGKIPFIKKLV
HHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHH
FEEFNKTSSKGYKGQTIVFTNARSRCHTIAEAIGGMAAPYHAGLTSQERRAVERQFEEGK
HHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHCCC
LACVVTTAALAAGVDFPASQVIFDALAMGIDWLSVQEFHQMMGRAGRPDFHDLGRVVVLA
EEEEEEHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHCCCEEEEE
EPGVSYSRETKLTEEEVAIQLLKGDMEEVSPVYDIEETSEEFAANAITCRGREADIITVG
CCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHCCCEEECCCCCCEEEEC
NSMVGVGDDPIQELLKHKLVRKSGGFLELSPLGKVMAEHFIGMERLLEIDKLVRVMDDPL
CCEECCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
EMIAELFCMEEEREKEKRRVDRRSTEKKESAWIGDKKASAKPDSEPAWVVKKKEIHAVEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHH
HAHDDARRKKAGSRKLRREEDEVEVAKPPRRASKEMEDRVERKKREASQFIPPPKRKQRE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCC
GTGPGVSGKGSKTGSSGDPVNIIEGAVDLRRAGKYDEALKILGNYVADNPKDSRALVELG
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
KVYDLRNERDTAYLCYQKAAAANTQNREAIDRMNAFLIGITVDIDNDAADSGKQPAVVKK
HHHHCCCCCCCEEEEHHHHHHCCCCHHHHHHHHCEEEEEEEEEECCCCCCCCCCCCCCCC
KKE
CCC
>Mature Secondary Structure 
TTIVQPWKKGYKVYFCDDAKAGKIKHVGTVELEETSKGMRPSEFFVRRPGTSHAEKTPT
CCCCCCHHCCCEEEEECCCCCCCEECCCEEEEHHHCCCCCCCHHEEECCCCCCCCCCCH
KEFITVLRANGPIKLTQTMPAFQDFLRGMQLSWETTTLCRTCLFDDRITPLTEETRIRCG
HHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCC
QEYVCLDCAKRELRRELGHIKHLGKRTQLHIENLLEEYRDLDMVLAILQPESLDTKKTMF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
DRLEAHDQTPTERIENLPLPRKFVDLCGVETLMPAQQRAVESGLLYGKDLLVVAATASGK
HHHHHCCCCHHHHHHCCCCCHHHHHHHCHHHHCHHHHHHHHHCCCCCCCEEEEEEECCCC
TFIGEMAGLKNYIEKRGRMLFLVPLVALANQKYDRFSEKYKSVTQTSIMTGVSRVNLPET
HHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RPVGNRGAGGGIVVGTYEGMDNLLRKGMPVSNIGTVVIDEVQMLEDPERGHRLDGLIARL
CCCCCCCCCCCEEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
KYVAPKAQFLYLSATIGSPNLLAKKLNAALVSYADRPVALERHLIFTEKDGKIPFIKKLV
HHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHH
FEEFNKTSSKGYKGQTIVFTNARSRCHTIAEAIGGMAAPYHAGLTSQERRAVERQFEEGK
HHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHCCC
LACVVTTAALAAGVDFPASQVIFDALAMGIDWLSVQEFHQMMGRAGRPDFHDLGRVVVLA
EEEEEEHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHCCCEEEEE
EPGVSYSRETKLTEEEVAIQLLKGDMEEVSPVYDIEETSEEFAANAITCRGREADIITVG
CCCCCCCCCCCCCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHCCCEEECCCCCCEEEEC
NSMVGVGDDPIQELLKHKLVRKSGGFLELSPLGKVMAEHFIGMERLLEIDKLVRVMDDPL
CCEECCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
EMIAELFCMEEEREKEKRRVDRRSTEKKESAWIGDKKASAKPDSEPAWVVKKKEIHAVEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHH
HAHDDARRKKAGSRKLRREEDEVEVAKPPRRASKEMEDRVERKKREASQFIPPPKRKQRE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCC
GTGPGVSGKGSKTGSSGDPVNIIEGAVDLRRAGKYDEALKILGNYVADNPKDSRALVELG
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
KVYDLRNERDTAYLCYQKAAAANTQNREAIDRMNAFLIGITVDIDNDAADSGKQPAVVKK
HHHHCCCCCCCEEEEHHHHHHCCCCHHHHHHHHCEEEEEEEEEECCCCCCCCCCCCCCCC
KKE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]