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The map label for this gene is rps6e

Identifier: 124486334

GI number: 124486334

Start: 1551606

End: 1551995

Strand: Reverse

Name: rps6e

Synonym: Mlab_1519

Alternate gene names: 124486334

Gene position: 1551995-1551606 (Counterclockwise)

Preceding gene: 124486335

Following gene: 124486329

Centisome position: 85.98

GC content: 51.03

Gene sequence:

>390_bases
ATGGTAGACTTTAAGGTCGTACTGTCAGACCCGAAAACCGGTCTTTCGTACAAAATAGATGCAGCGGGTGCAGCAGCAGG
TGCTCTTCTTGGAAAGAAGATCGGCACAGAAGTTGACGGCGCTCCGTTCGGCATGAGCGGCTATAAGATCACAATCACCG
GCGGATCCGACAAGACCGGAACTCCTGCACGCCCGGATCTTCCAGGTAACGGCAGAAGAGGTCTTCTGATCTCTGATGGA
TTCGGCTTCAATGCAACCCACAACGGTGAGAGAAGAAGAAAGAGCCAGCGCGGAAACGAGATCGCTGCCGACTTCGTTCA
GGTTAATGCAAAAATTACCGTTTACGGTGAAAAACCGGTTACCGAGATTTTTGCTGCAGCAGCAGAATAA

Upstream 100 bases:

>100_bases
CCGGAAAACACAGCCTTTCTGGGGCAAGTAGTATAAATGTGGAGATACTAAATATATGGGTACTTCGGCATCATAGATAT
CGAGGAGATGTGTATATACA

Downstream 100 bases:

>100_bases
ATCTCAATATCTTTTTTATTCTTCGATTCTTTTGATGAGGTCGGCTTTGTATGGTCCGTAGGGGACGCGATATTTTTTTG
CAAGGAGTATGACTGCCGCC

Product: 30S ribosomal protein S6e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MVDFKVVLSDPKTGLSYKIDAAGAAAGALLGKKIGTEVDGAPFGMSGYKITITGGSDKTGTPARPDLPGNGRRGLLISDG
FGFNATHNGERRRKSQRGNEIAADFVQVNAKITVYGEKPVTEIFAAAAE

Sequences:

>Translated_129_residues
MVDFKVVLSDPKTGLSYKIDAAGAAAGALLGKKIGTEVDGAPFGMSGYKITITGGSDKTGTPARPDLPGNGRRGLLISDG
FGFNATHNGERRRKSQRGNEIAADFVQVNAKITVYGEKPVTEIFAAAAE
>Mature_129_residues
MVDFKVVLSDPKTGLSYKIDAAGAAAGALLGKKIGTEVDGAPFGMSGYKITITGGSDKTGTPARPDLPGNGRRGLLISDG
FGFNATHNGERRRKSQRGNEIAADFVQVNAKITVYGEKPVTEIFAAAAE

Specific function: Unknown

COG id: COG2125

COG function: function code J; Ribosomal protein S6E (S10)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6E_METLZ (A2STM7)

Other databases:

- EMBL:   CP000559
- RefSeq:   YP_001030950.1
- STRING:   A2STM7
- GeneID:   4794501
- GenomeReviews:   CP000559_GR
- KEGG:   mla:Mlab_1519
- eggNOG:   arNOG11366
- HOGENOM:   HBG497422
- OMA:   DGFPMRP
- ProtClustDB:   PRK04290
- BioCyc:   MLAB410358:MLAB_1519-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00512
- InterPro:   IPR001377
- InterPro:   IPR020924
- PANTHER:   PTHR11502
- PANTHER:   PTHR11502:SF2

Pfam domain/function: PF01092 Ribosomal_S6e

EC number: NA

Molecular weight: Translated: 13414; Mature: 13414

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS00578 RIBOSOMAL_S6E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDFKVVLSDPKTGLSYKIDAAGAAAGALLGKKIGTEVDGAPFGMSGYKITITGGSDKTG
CCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCC
TPARPDLPGNGRRGLLISDGFGFNATHNGERRRKSQRGNEIAADFVQVNAKITVYGEKPV
CCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEEEECEEEEEECCCCH
TEIFAAAAE
HHHHHHCCC
>Mature Secondary Structure
MVDFKVVLSDPKTGLSYKIDAAGAAAGALLGKKIGTEVDGAPFGMSGYKITITGGSDKTG
CCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCC
TPARPDLPGNGRRGLLISDGFGFNATHNGERRRKSQRGNEIAADFVQVNAKITVYGEKPV
CCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEEEECEEEEEECCCCH
TEIFAAAAE
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA