| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124486328
Identifier: 124486328
GI number: 124486328
Start: 1548406
End: 1549050
Strand: Reverse
Name: 124486328
Synonym: Mlab_1513
Alternate gene names: NA
Gene position: 1549050-1548406 (Counterclockwise)
Preceding gene: 124486329
Following gene: 124486327
Centisome position: 85.82
GC content: 53.8
Gene sequence:
>645_bases ATGTACGATTTCCACTGTCATACAACGATGAGCGACGGCGAACTGATCCCGACCGAACTGATCCGCCGGATGGCAGTTGC CGGATATACGGAGATGGCGATTGCCGATCATGCGGATTTCTCCAATGTGGAATTGCTTATACAGTCTCAGGAAAAAGTAA AGCGGTCTGCAGCATTGTATGGAGTAAGGCTTTTTACCGGTGTCGAGATCACGCACGTACCTCCGGCCGAGATCGCCGAC CTTGCGAAGTATGCCAGATCTCTCGGTGCGGAAGTTGTGATCGTCCACGGTGAAACGATCACGGAGCCGGTTGCTCCCGG GACAAATCTGGCGGCAGTGACCTGTCCCGATGTGGATATTCTGGCTCACCCTGGAATGATCTCCGAGGAAGAGGCTTTGC TTGCAGCAAAGAACGGTGTGTTTCTGGAGATCACGTCAAGGAACGGGCACAATAAGGCAAATGGCCACGTTCTTGCGTCT GCGCGCCGCGCGGGAGCCGGTGTTGTGGTTCAGTCGGACATTCACGGCCCGGATGATATAATTAACGAAAAAATGCGCGG TCTGGTCGCTCGAGGGGCAGGTATGAGCGAAGACGAGGCAGAAATGGTTCTTTCCCTCACTTCCGCAGAGATTCTTTCTC TCTAA
Upstream 100 bases:
>100_bases CGCAGTGGTATAAGGCCGGCGGACGTATTCGCGTGGAGTATGCCGGATCCAAAGAAGATCTTCTGAGAAGCGTCGCCGGA AAACTCGGCGGGAAGTAAGC
Downstream 100 bases:
>100_bases TTTATATTTTAGTATTGTGGGGAATGTATTTATAGTACTTCTTACGCATTATATTATGCATAAATACTCTGTGGTTTGCA TTCCACGGGTTTGCTTGACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 214; Mature: 214
Protein sequence:
>214_residues MYDFHCHTTMSDGELIPTELIRRMAVAGYTEMAIADHADFSNVELLIQSQEKVKRSAALYGVRLFTGVEITHVPPAEIAD LAKYARSLGAEVVIVHGETITEPVAPGTNLAAVTCPDVDILAHPGMISEEEALLAAKNGVFLEITSRNGHNKANGHVLAS ARRAGAGVVVQSDIHGPDDIINEKMRGLVARGAGMSEDEAEMVLSLTSAEILSL
Sequences:
>Translated_214_residues MYDFHCHTTMSDGELIPTELIRRMAVAGYTEMAIADHADFSNVELLIQSQEKVKRSAALYGVRLFTGVEITHVPPAEIAD LAKYARSLGAEVVIVHGETITEPVAPGTNLAAVTCPDVDILAHPGMISEEEALLAAKNGVFLEITSRNGHNKANGHVLAS ARRAGAGVVVQSDIHGPDDIINEKMRGLVARGAGMSEDEAEMVLSLTSAEILSL >Mature_214_residues MYDFHCHTTMSDGELIPTELIRRMAVAGYTEMAIADHADFSNVELLIQSQEKVKRSAALYGVRLFTGVEITHVPPAEIAD LAKYARSLGAEVVIVHGETITEPVAPGTNLAAVTCPDVDILAHPGMISEEEALLAAKNGVFLEITSRNGHNKANGHVLAS ARRAGAGVVVQSDIHGPDDIINEKMRGLVARGAGMSEDEAEMVLSLTSAEILSL
Specific function: Unknown
COG id: COG1387
COG function: function code ER; Histidinol phosphatase and related hydrolases of the PHP family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004013 - InterPro: IPR003141 - InterPro: IPR016195 [H]
Pfam domain/function: PF02811 PHP [H]
EC number: NA
Molecular weight: Translated: 22796; Mature: 22796
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYDFHCHTTMSDGELIPTELIRRMAVAGYTEMAIADHADFSNVELLIQSQEKVKRSAALY CCEEEEECCCCCCCCCHHHHHHHHHHCCCHHHEEECCCCCCCEEEEEECHHHHHHHHHHH GVRLFTGVEITHVPPAEIADLAKYARSLGAEVVIVHGETITEPVAPGTNLAAVTCPDVDI EEEEHCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCE LAHPGMISEEEALLAAKNGVFLEITSRNGHNKANGHVLASARRAGAGVVVQSDIHGPDDI EECCCCCCCCCHHEEECCCEEEEEECCCCCCCCCCEEEEECCCCCCCEEEECCCCCCHHH INEKMRGLVARGAGMSEDEAEMVLSLTSAEILSL HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MYDFHCHTTMSDGELIPTELIRRMAVAGYTEMAIADHADFSNVELLIQSQEKVKRSAALY CCEEEEECCCCCCCCCHHHHHHHHHHCCCHHHEEECCCCCCCEEEEEECHHHHHHHHHHH GVRLFTGVEITHVPPAEIADLAKYARSLGAEVVIVHGETITEPVAPGTNLAAVTCPDVDI EEEEHCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCE LAHPGMISEEEALLAAKNGVFLEITSRNGHNKANGHVLASARRAGAGVVVQSDIHGPDDI EECCCCCCCCCHHEEECCCEEEEEECCCCCCCCCCEEEEECCCCCCCEEEECCCCCCHHH INEKMRGLVARGAGMSEDEAEMVLSLTSAEILSL HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]