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The map label for this gene is rps13p

Identifier: 124486067

GI number: 124486067

Start: 1273296

End: 1273748

Strand: Reverse

Name: rps13p

Synonym: Mlab_1247

Alternate gene names: 124486067

Gene position: 1273748-1273296 (Counterclockwise)

Preceding gene: 124486068

Following gene: 124486066

Centisome position: 70.57

GC content: 53.64

Gene sequence:

>453_bases
ATGGTTGAAGAGTCAGAATTAAAATATTTTGTGCGGATCATTAACACTGATCTGGACGGTACCCAGCCCGTGCAGCTTGC
GCTGACGGGAATTAAGGGCATCGGCCTCCATGCCGCACTCATCATCGCACGCCGTGCTGGCGTCGACACCCGTGCCACCA
TGGGTCTCTTAGGCGATGAAGATGTGGCCGCGATTGAAGAGCAGGTAAAAGCATACCCTGCCTCAGTGCCAAAATGGATG
GTCAACCGCCCGGTAGATGTGTACTCGGGAGAACCGAAACACCTCTACGGCAGCGACCTTTCCCTTGCGAAGGAAGATGA
CATCAACCTCATGAAGAAGATGCGGTGTTACCGCGGTATCCGTCATGAGAATGGTCTCAAAGTTCGCGGACAGCGTACGA
AAGCAACCGGCAGATTCGGTAAGATCGTCGGTGTCTCCAAGAGGCGGAACTAA

Upstream 100 bases:

>100_bases
CTCGAGGGTTCAAATCCCTCCGTCTGCGCTTAACATACGCAACACGCACATTTTGTGTGTTTCAAATTTAGACTAAACTC
TCCAAAAGAGAGGCGAAAAA

Downstream 100 bases:

>100_bases
GCAGGTGATTTAAAATGGGATACCCAGGAAAGAACACCAAACAATACTCTTCCCCGAAGCGCCGCTTCGAGAAGTCGCGT
ATTGAATCTGAACGCGTCCT

Product: 30S ribosomal protein S13P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MVEESELKYFVRIINTDLDGTQPVQLALTGIKGIGLHAALIIARRAGVDTRATMGLLGDEDVAAIEEQVKAYPASVPKWM
VNRPVDVYSGEPKHLYGSDLSLAKEDDINLMKKMRCYRGIRHENGLKVRGQRTKATGRFGKIVGVSKRRN

Sequences:

>Translated_150_residues
MVEESELKYFVRIINTDLDGTQPVQLALTGIKGIGLHAALIIARRAGVDTRATMGLLGDEDVAAIEEQVKAYPASVPKWM
VNRPVDVYSGEPKHLYGSDLSLAKEDDINLMKKMRCYRGIRHENGLKVRGQRTKATGRFGKIVGVSKRRN
>Mature_150_residues
MVEESELKYFVRIINTDLDGTQPVQLALTGIKGIGLHAALIIARRAGVDTRATMGLLGDEDVAAIEEQVKAYPASVPKWM
VNRPVDVYSGEPKHLYGSDLSLAKEDDINLMKKMRCYRGIRHENGLKVRGQRTKATGRFGKIVGVSKRRN

Specific function: Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicat

COG id: COG0099

COG function: function code J; Ribosomal protein S13

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S13P family

Homologues:

Organism=Homo sapiens, GI11968182, Length=152, Percent_Identity=35.5263157894737, Blast_Score=104, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17542018, Length=152, Percent_Identity=37.5, Blast_Score=108, Evalue=8e-25,
Organism=Saccharomyces cerevisiae, GI6323615, Length=138, Percent_Identity=36.231884057971, Blast_Score=97, Evalue=7e-22,
Organism=Saccharomyces cerevisiae, GI6320658, Length=138, Percent_Identity=36.231884057971, Blast_Score=97, Evalue=7e-22,
Organism=Drosophila melanogaster, GI17136882, Length=150, Percent_Identity=38, Blast_Score=108, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24656100, Length=150, Percent_Identity=38, Blast_Score=108, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS13_METLZ (A2SSW0)

Other databases:

- EMBL:   CP000559
- RefSeq:   YP_001030683.1
- ProteinModelPortal:   A2SSW0
- SMR:   A2SSW0
- STRING:   A2SSW0
- GeneID:   4794911
- GenomeReviews:   CP000559_GR
- KEGG:   mla:Mlab_1247
- eggNOG:   arNOG10594
- HOGENOM:   HBG737405
- OMA:   MNTNIDG
- PhylomeDB:   A2SSW0
- ProtClustDB:   PRK04053
- BioCyc:   MLAB410358:MLAB_1247-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01315_A
- InterPro:   IPR001892
- InterPro:   IPR010979
- InterPro:   IPR019977
- InterPro:   IPR018269
- PIRSF:   PIRSF002134
- TIGRFAMs:   TIGR03629

Pfam domain/function: PF00416 Ribosomal_S13; SSF46946 Ribosomal_H2TH

EC number: NA

Molecular weight: Translated: 16651; Mature: 16651

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS00646 RIBOSOMAL_S13_1; PS50159 RIBOSOMAL_S13_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEESELKYFVRIINTDLDGTQPVQLALTGIKGIGLHAALIIARRAGVDTRATMGLLGDE
CCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCHHHCCCCCCC
DVAAIEEQVKAYPASVPKWMVNRPVDVYSGEPKHLYGSDLSLAKEDDINLMKKMRCYRGI
HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCC
RHENGLKVRGQRTKATGRFGKIVGVSKRRN
CCCCCEEECCCCCCCCCCCCCEEECCCCCC
>Mature Secondary Structure
MVEESELKYFVRIINTDLDGTQPVQLALTGIKGIGLHAALIIARRAGVDTRATMGLLGDE
CCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCHHHCCCCCCC
DVAAIEEQVKAYPASVPKWMVNRPVDVYSGEPKHLYGSDLSLAKEDDINLMKKMRCYRGI
HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCC
RHENGLKVRGQRTKATGRFGKIVGVSKRRN
CCCCCEEECCCCCCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA