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The map label for this gene is rpl18e [H]

Identifier: 124486063

GI number: 124486063

Start: 1271156

End: 1271509

Strand: Reverse

Name: rpl18e [H]

Synonym: Mlab_1243

Alternate gene names: 124486063

Gene position: 1271509-1271156 (Counterclockwise)

Preceding gene: 124486064

Following gene: 124486062

Centisome position: 70.45

GC content: 50.0

Gene sequence:

>354_bases
ATGAATAAAACTAACCCACGTCTCGAATCCTTAATCATGATGCTTAAACGCGCATCCCGGGAGAACGAGGCAAACATCTG
GCGTGAAATTGCCGGCCGTCTGAACACGTCCAGCAAGAATCAGGCAGAAGTGAACGTCGGTAAAATCAACCGCTATGCAA
ACGAGAATGAGATCATCCTGGTTCCGGGCAAAGTGCTCGCAGCAGGTGTAATTGGTACTTCCGTATCAGTTGCAGCTCTC
AACTTCTCCGATGCAGCCCGCGAGAAAATAACCGAAGCAAAAGGCACCTGCATGACAATCGAAGAGCTTGTCGCTGCAAA
TCCGAAAGGAAGCCGCGTAAGGATCCTGAGGTGA

Upstream 100 bases:

>100_bases
CGACGGGTCCTTGCCGGTGAAAGAGATCATTGAAAGAGCACTGCTGCATATCAAGTCAAGATCCTCAGATCTTATTGAAG
CATTACAGGAGGGACTGTAA

Downstream 100 bases:

>100_bases
GATGAGTATGGTAACAGTTATTGATGGAGAAAATCTCCTTCTTGGAAGACTTTCCAGTATTGTTGCAACCCGCATCCTCG
CCGGTGAGGAGATTGCAATC

Product: 50S ribosomal protein L18e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MNKTNPRLESLIMMLKRASRENEANIWREIAGRLNTSSKNQAEVNVGKINRYANENEIILVPGKVLAAGVIGTSVSVAAL
NFSDAAREKITEAKGTCMTIEELVAANPKGSRVRILR

Sequences:

>Translated_117_residues
MNKTNPRLESLIMMLKRASRENEANIWREIAGRLNTSSKNQAEVNVGKINRYANENEIILVPGKVLAAGVIGTSVSVAAL
NFSDAAREKITEAKGTCMTIEELVAANPKGSRVRILR
>Mature_117_residues
MNKTNPRLESLIMMLKRASRENEANIWREIAGRLNTSSKNQAEVNVGKINRYANENEIILVPGKVLAAGVIGTSVSVAAL
NFSDAAREKITEAKGTCMTIEELVAANPKGSRVRILR

Specific function: Unknown

COG id: COG1727

COG function: function code J; Ribosomal protein L18E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18e family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000039
- InterPro:   IPR021131
- InterPro:   IPR022947 [H]

Pfam domain/function: PF00828 Ribosomal_L18e [H]

EC number: NA

Molecular weight: Translated: 12794; Mature: 12794

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTNPRLESLIMMLKRASRENEANIWREIAGRLNTSSKNQAEVNVGKINRYANENEIIL
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHCCCCCCCEEE
VPGKVLAAGVIGTSVSVAALNFSDAAREKITEAKGTCMTIEELVAANPKGSRVRILR
ECCHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEHHHHHHCCCCCCEEEEEC
>Mature Secondary Structure
MNKTNPRLESLIMMLKRASRENEANIWREIAGRLNTSSKNQAEVNVGKINRYANENEIIL
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHCCCCCCCEEE
VPGKVLAAGVIGTSVSVAALNFSDAAREKITEAKGTCMTIEELVAANPKGSRVRILR
ECCHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEHHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA