| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124486022
Identifier: 124486022
GI number: 124486022
Start: 1230451
End: 1231176
Strand: Reverse
Name: 124486022
Synonym: Mlab_1202
Alternate gene names: NA
Gene position: 1231176-1230451 (Counterclockwise)
Preceding gene: 124486023
Following gene: 124486021
Centisome position: 68.21
GC content: 48.48
Gene sequence:
>726_bases GTGAGTCAAATGTTAGGCATCCCGGATGAATGTTCGGTAGAGAGAAACCTTGATGTGAAGCGTCTTCCTCTGAGCGAGGT GAAACCTGGAGAACGAAATCGGTTTAGGGATGTGGTTCGAGAGCTGAAGGTCTCGGCAGTTTTGACGGATAAGGTCCTTC CAGCATATACTACGGAGAGATGCATTGTGCAGGCGGTCCAGGTGTTTGAGGTGCGGGTAAATTCTCTGCGGTCAGCACCC TTCGTATGCGGCGTTTTGCAGAAAATGACGAAAACGCTTTGTATCATTTTTGTGCGGGATGATCATCAGGAGCAGTTTTC ATTTGCATTGAAGCGTTTGAATCTCCAGTATGCGTCAGAAGTGGTTGTTACGGATCAGTTTTTGAGTGTGCCACGCGTAT CCGGCGTTTCGGGAAATGGCATGCGATTGATGGAGATGTATGCTGGATGGGGTGTTGTGGTGAATATGACGAGTCTTTAT TCATGGTATCTTGAACTGATGGTGAAGTGTTTTGTTATCACACATAGGAAGGTCTGGTCCGGGATGGAGGGATTGCTTTC GTCAAAAGTATGGTATAATTCCGATGATGTTCTTTCGATGTTTTCGGATCTGAAACGGCTGGTAGGTTTGTCTGAGGAGC GTGGCCGGTCGCTTTCGATGGGGGAATCTGTGCGGCTGAACGGGGAGTTGAGAGAGGTGTATGAGAGGCTGGAGAGGTAT GCCTGA
Upstream 100 bases:
>100_bases AACGTGCCGAGGAGAGTATTTTTGATTTCACAGGGTTCGTAGACGAGTTTGCTCATACTGCGGAGGATGATTTCGAGTTG ATTTCCTTTTTAATTGTGGA
Downstream 100 bases:
>100_bases TGGATGCCGGTGAAGGAATAATTGTAGTTTTTGTCAGTATTATTGCGGGATTTTTAAGTGTATTTTTGCTGAAGGAGATT TTATCCGATTTTATCTTTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MSQMLGIPDECSVERNLDVKRLPLSEVKPGERNRFRDVVRELKVSAVLTDKVLPAYTTERCIVQAVQVFEVRVNSLRSAP FVCGVLQKMTKTLCIIFVRDDHQEQFSFALKRLNLQYASEVVVTDQFLSVPRVSGVSGNGMRLMEMYAGWGVVVNMTSLY SWYLELMVKCFVITHRKVWSGMEGLLSSKVWYNSDDVLSMFSDLKRLVGLSEERGRSLSMGESVRLNGELREVYERLERY A
Sequences:
>Translated_241_residues MSQMLGIPDECSVERNLDVKRLPLSEVKPGERNRFRDVVRELKVSAVLTDKVLPAYTTERCIVQAVQVFEVRVNSLRSAP FVCGVLQKMTKTLCIIFVRDDHQEQFSFALKRLNLQYASEVVVTDQFLSVPRVSGVSGNGMRLMEMYAGWGVVVNMTSLY SWYLELMVKCFVITHRKVWSGMEGLLSSKVWYNSDDVLSMFSDLKRLVGLSEERGRSLSMGESVRLNGELREVYERLERY A >Mature_240_residues SQMLGIPDECSVERNLDVKRLPLSEVKPGERNRFRDVVRELKVSAVLTDKVLPAYTTERCIVQAVQVFEVRVNSLRSAPF VCGVLQKMTKTLCIIFVRDDHQEQFSFALKRLNLQYASEVVVTDQFLSVPRVSGVSGNGMRLMEMYAGWGVVVNMTSLYS WYLELMVKCFVITHRKVWSGMEGLLSSKVWYNSDDVLSMFSDLKRLVGLSEERGRSLSMGESVRLNGELREVYERLERYA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27626; Mature: 27494
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQMLGIPDECSVERNLDVKRLPLSEVKPGERNRFRDVVRELKVSAVLTDKVLPAYTTER CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH CIVQAVQVFEVRVNSLRSAPFVCGVLQKMTKTLCIIFVRDDHQEQFSFALKRLNLQYASE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHH VVVTDQFLSVPRVSGVSGNGMRLMEMYAGWGVVVNMTSLYSWYLELMVKCFVITHRKVWS HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GMEGLLSSKVWYNSDDVLSMFSDLKRLVGLSEERGRSLSMGESVRLNGELREVYERLERY HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCEEECCHHHHHHHHHHHC A C >Mature Secondary Structure SQMLGIPDECSVERNLDVKRLPLSEVKPGERNRFRDVVRELKVSAVLTDKVLPAYTTER CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH CIVQAVQVFEVRVNSLRSAPFVCGVLQKMTKTLCIIFVRDDHQEQFSFALKRLNLQYASE HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHH VVVTDQFLSVPRVSGVSGNGMRLMEMYAGWGVVVNMTSLYSWYLELMVKCFVITHRKVWS HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GMEGLLSSKVWYNSDDVLSMFSDLKRLVGLSEERGRSLSMGESVRLNGELREVYERLERY HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCEEECCHHHHHHHHHHHC A C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA