| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485974
Identifier: 124485974
GI number: 124485974
Start: 1169431
End: 1170090
Strand: Reverse
Name: 124485974
Synonym: Mlab_1154
Alternate gene names: NA
Gene position: 1170090-1169431 (Counterclockwise)
Preceding gene: 124485975
Following gene: 124485973
Centisome position: 64.83
GC content: 56.36
Gene sequence:
>660_bases ATGCAGATACGATACGCCGGCCACTCCTGTTTCATCATCGAAGGCTCGAAGAAACTTTTATTCGATCCCATGCCGCTCGA AGATCCCGCGGCAGTTGAGGCCGATCTCACCCTGATATCCCACGCGCACGCCGATCATATCGGTGATGCTTTTGCTCGTT TCTCCCTCACGATCGCGGTCCACGAACTGTCCGGCTATCTGAAATCGCTCGGCGTCAAAACGATCGGGATGAACATCGGC GGCTCGGTCGAATGGGAGGGGATCACGGTTCGAATGGTCCCGGCAACGCATTCGTCCTCGATCCGCCAGAAAGACGGCAC AAGTCTCTATATGGGGCAGGCCTGCGGATTCGTCGTCGAGATGGACGGGCATGTAATATATTACGCTGGCGACACCGGGC TTTTCTCCGATATGAAACTCATTCGCGAACTCTACCACCCGGACATCGCGATCCTTCCTGCCGGCGGCCGCTATACGATG GGACCCGAAGAGTGTATGATGGCCGCGGCATGGATTGGGGCGAAGACGGTCATTCCGATGCATGTGAATACGTATCCGGA GATCGAGCAGGATATGCCGGCGTTTAAGCGGGCCATCGAGCTGACGACCGTGATGCATGTCGAAATTATGCAGCCGGACG ATGTGCTCGAACTGCCGTAA
Upstream 100 bases:
>100_bases GAAGATACGCTCGGCGAGTCCATCGACGTTGCCGAGTCGACGGATATGACCGAACTCAACTAACCCTATTTTTTTATTTG CCGAAGACGATTATCTACGC
Downstream 100 bases:
>100_bases AAATCCAGGTCCGGGTATAAAACCTATCATTTTATTTAAATAGAAAAACCAATCACTACATATTTATGACAAATGTGAAG ATTGGTAACACCAGATCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 219; Mature: 219
Protein sequence:
>219_residues MQIRYAGHSCFIIEGSKKLLFDPMPLEDPAAVEADLTLISHAHADHIGDAFARFSLTIAVHELSGYLKSLGVKTIGMNIG GSVEWEGITVRMVPATHSSSIRQKDGTSLYMGQACGFVVEMDGHVIYYAGDTGLFSDMKLIRELYHPDIAILPAGGRYTM GPEECMMAAAWIGAKTVIPMHVNTYPEIEQDMPAFKRAIELTTVMHVEIMQPDDVLELP
Sequences:
>Translated_219_residues MQIRYAGHSCFIIEGSKKLLFDPMPLEDPAAVEADLTLISHAHADHIGDAFARFSLTIAVHELSGYLKSLGVKTIGMNIG GSVEWEGITVRMVPATHSSSIRQKDGTSLYMGQACGFVVEMDGHVIYYAGDTGLFSDMKLIRELYHPDIAILPAGGRYTM GPEECMMAAAWIGAKTVIPMHVNTYPEIEQDMPAFKRAIELTTVMHVEIMQPDDVLELP >Mature_219_residues MQIRYAGHSCFIIEGSKKLLFDPMPLEDPAAVEADLTLISHAHADHIGDAFARFSLTIAVHELSGYLKSLGVKTIGMNIG GSVEWEGITVRMVPATHSSSIRQKDGTSLYMGQACGFVVEMDGHVIYYAGDTGLFSDMKLIRELYHPDIAILPAGGRYTM GPEECMMAAAWIGAKTVIPMHVNTYPEIEQDMPAFKRAIELTTVMHVEIMQPDDVLELP
Specific function: Unknown
COG id: COG2220
COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0173 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1154_METLZ (A2SSL7)
Other databases:
- EMBL: CP000559 - RefSeq: YP_001030590.1 - ProteinModelPortal: A2SSL7 - STRING: A2SSL7 - GeneID: 4796133 - GenomeReviews: CP000559_GR - KEGG: mla:Mlab_1154 - eggNOG: arNOG08649 - HOGENOM: HBG741314 - OMA: FPIIDQT - BioCyc: MLAB410358:MLAB_1154-MONOMER - HAMAP: MF_00457 - InterPro: IPR001279 - InterPro: IPR022877 - SMART: SM00849
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24055; Mature: 24055
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 6.4 %Met (Translated Protein) 7.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 6.4 %Met (Mature Protein) 7.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIRYAGHSCFIIEGSKKLLFDPMPLEDPAAVEADLTLISHAHADHIGDAFARFSLTIAV CEEEECCCEEEEEECCCEEEECCCCCCCCCCCEEEEHEEHHHCHHHHHHHHHHEEEEEEE HELSGYLKSLGVKTIGMNIGGSVEWEGITVRMVPATHSSSIRQKDGTSLYMGQACGFVVE EHHHHHHHHCCEEEEEECCCCEEEECCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEE MDGHVIYYAGDTGLFSDMKLIRELYHPDIAILPAGGRYTMGPEECMMAAAWIGAKTVIPM ECCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE HVNTYPEIEQDMPAFKRAIELTTVMHVEIMQPDDVLELP EECCCCCHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCC >Mature Secondary Structure MQIRYAGHSCFIIEGSKKLLFDPMPLEDPAAVEADLTLISHAHADHIGDAFARFSLTIAV CEEEECCCEEEEEECCCEEEECCCCCCCCCCCEEEEHEEHHHCHHHHHHHHHHEEEEEEE HELSGYLKSLGVKTIGMNIGGSVEWEGITVRMVPATHSSSIRQKDGTSLYMGQACGFVVE EHHHHHHHHCCEEEEEECCCCEEEECCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEE MDGHVIYYAGDTGLFSDMKLIRELYHPDIAILPAGGRYTMGPEECMMAAAWIGAKTVIPM ECCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE HVNTYPEIEQDMPAFKRAIELTTVMHVEIMQPDDVLELP EECCCCCHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA