| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485966
Identifier: 124485966
GI number: 124485966
Start: 1162670
End: 1163224
Strand: Reverse
Name: 124485966
Synonym: Mlab_1146
Alternate gene names: NA
Gene position: 1163224-1162670 (Counterclockwise)
Preceding gene: 124485967
Following gene: 124485964
Centisome position: 64.45
GC content: 50.81
Gene sequence:
>555_bases ATGACCCCTCAGCCGCCTGAGATATTCGTCGATCCTGCATCCGTGTACGTCGTGATGATCAACGAAGTTGTCCCAAAAGA TCCCAAAGAGGATTTTTACGGAAGCGCAGGGGCCTCGTATGCAGAGTCGGCGATCGCGTTGTTCCGGCAGGCGGGCGTTG ATGTTTCCTCTGTTTCGGATCTCCTCGACCGCGGGATCTATCTTACAAACGCGGTAAAATATCCTAAAACCGGATACGCC GTGGAACTATCCGCGATAAAACGCAGTCTGCCGCTGCTGGAGGAAGAGCTTTCCCGCTTCCCCAATCTCCGCGTTGTCAT GCTCATGGGCGATACGGCAAAAAAGTCGTTCAATACGATCGCAAAAAAGCAGACCGGTAAAAACTGCATCCCGTCCGGTG CGACCTACAAACTGCGGGCCGGCGAGTTCTATTTTGGAAACGTGCGGGTTATCCCATCGTATATCATGACCGGCGGGAAT CTTCTGATCGAGAAATCCAAGACCCAAATGATCACTGAAGATATAAAAAAGATGATGGAGATTATTCTTTCGTGA
Upstream 100 bases:
>100_bases TCAATAAAACGGCAGAGATGGCAGGAATCGTCGGCGAACGTCTGACAAAATCCTATCTCGAGATCCTGCTGGACTCCAGA AAAACCTGAATATCAAAAAC
Downstream 100 bases:
>100_bases CTTCTATTGGGTCGCTGATGTTTTTCAGCACGATTTTTGGTTCGTCCTCATCATCATCCAGTGTGATGAGTGCATAATTC CCATCGTATGCCGGCCCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 184; Mature: 183
Protein sequence:
>184_residues MTPQPPEIFVDPASVYVVMINEVVPKDPKEDFYGSAGASYAESAIALFRQAGVDVSSVSDLLDRGIYLTNAVKYPKTGYA VELSAIKRSLPLLEEELSRFPNLRVVMLMGDTAKKSFNTIAKKQTGKNCIPSGATYKLRAGEFYFGNVRVIPSYIMTGGN LLIEKSKTQMITEDIKKMMEIILS
Sequences:
>Translated_184_residues MTPQPPEIFVDPASVYVVMINEVVPKDPKEDFYGSAGASYAESAIALFRQAGVDVSSVSDLLDRGIYLTNAVKYPKTGYA VELSAIKRSLPLLEEELSRFPNLRVVMLMGDTAKKSFNTIAKKQTGKNCIPSGATYKLRAGEFYFGNVRVIPSYIMTGGN LLIEKSKTQMITEDIKKMMEIILS >Mature_183_residues TPQPPEIFVDPASVYVVMINEVVPKDPKEDFYGSAGASYAESAIALFRQAGVDVSSVSDLLDRGIYLTNAVKYPKTGYAV ELSAIKRSLPLLEEELSRFPNLRVVMLMGDTAKKSFNTIAKKQTGKNCIPSGATYKLRAGEFYFGNVRVIPSYIMTGGNL LIEKSKTQMITEDIKKMMEIILS
Specific function: Unknown
COG id: COG1573
COG function: function code L; Uracil-DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20301; Mature: 20170
Theoretical pI: Translated: 8.86; Mature: 8.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPQPPEIFVDPASVYVVMINEVVPKDPKEDFYGSAGASYAESAIALFRQAGVDVSSVSD CCCCCCEEEECCHHEEEEEECHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH LLDRGIYLTNAVKYPKTGYAVELSAIKRSLPLLEEELSRFPNLRVVMLMGDTAKKSFNTI HHHCCEEEECCCCCCCCCCEEEHHHHHHHCCHHHHHHHHCCCCEEEEEECCCHHHHHHHH AKKQTGKNCIPSGATYKLRAGEFYFGNVRVIPSYIMTGGNLLIEKSKTQMITEDIKKMME HHHHCCCCCCCCCCEEEEECCEEEECCEEEEEHHHHCCCCEEEECCHHHHHHHHHHHHHH IILS HHCC >Mature Secondary Structure TPQPPEIFVDPASVYVVMINEVVPKDPKEDFYGSAGASYAESAIALFRQAGVDVSSVSD CCCCCEEEECCHHEEEEEECHHCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH LLDRGIYLTNAVKYPKTGYAVELSAIKRSLPLLEEELSRFPNLRVVMLMGDTAKKSFNTI HHHCCEEEECCCCCCCCCCEEEHHHHHHHCCHHHHHHHHCCCCEEEEEECCCHHHHHHHH AKKQTGKNCIPSGATYKLRAGEFYFGNVRVIPSYIMTGGNLLIEKSKTQMITEDIKKMME HHHHCCCCCCCCCCEEEEECCEEEECCEEEEEHHHHCCCCEEEECCHHHHHHHHHHHHHH IILS HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA