| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485831
Identifier: 124485831
GI number: 124485831
Start: 1017613
End: 1018374
Strand: Reverse
Name: 124485831
Synonym: Mlab_1011
Alternate gene names: NA
Gene position: 1018374-1017613 (Counterclockwise)
Preceding gene: 124485832
Following gene: 124485830
Centisome position: 56.42
GC content: 53.02
Gene sequence:
>762_bases ATGGCTGAAGAAATTCCTGACGGAAAACTCGAAGAGCCGGTCGAAATTCTGTATCAGCTCGCAAAACGCGGCGAGATCGA TCCGTGGAATATCGATATCGTCGCGGTGACAGAACGGTTTTTGACTGAACTTGAACGCAGGCGCGAACTTGATCTGATGA TCTCGGGTCGGACGATATTCTATGCGTCGGTTCTGCTTCGGATGAAGTCCGAGCTGCTTGACGGTCTGGAGGATGACGGG GGGTGTGATGAAGATATTTCCGAGGAAGGGTTGGATCCTTTCTCGGAAGATGATGTGATCACGGAACGTGCGCTCGGCCC GATCGAACTTCTTGAGCGCGAGATCGACCGCAGACTCAAGCGGAAGGATGCGCGGAAGCGTCCGGTCACCCTTTACGAAC TGATCAAACAGCTCAAACTTGCGGAGAAGGCGGAGCGAAGACGGCAGAGAAGGCGGCGGTGTATCGATTCAGAGGATGAA TTATTCGAGGAACCGGATGCCGACGAGGTTGTGGGAATTGCGCATGATGAGGATTACGAACGTATGGCCGGGCGGATTTA TGCTCTCGTTGAGACGCATCCGGATGCGCGTGACCCGGGGGTTTCCCTGCATGAACTGGCGTTAACTCTCCACTGGCCGG TGTATTTTGTGTATCTCCCCTGTCTTTTTCTTGTTCAGAGCGGCAGGGTCGATCTTGAGCAGGATGAGTTTTTCGGTGAT CTTTGGGTGGTGATTCAGGATGGCTATACAGAGAAGAGTTAA
Upstream 100 bases:
>100_bases GTTTCGCACAGAAAACCGATGATCGAAGCGGCGGACCGGATGGTGGGCGTGACTCTGCGTATGAGCGATAAGAGTACGCT TGTGACTGGTGTGAAGGTGA
Downstream 100 bases:
>100_bases AAAAGAGCGTAATTTCTGGATAATTCTGTTGGATGTTCTGCTTATCCTTTGTCTGATCGGATTTGTGGCAATGCTTGTCT CTATTGTGCTGTCATTTTTG
Product: condensin subunit ScpA
Products: NA
Alternate protein names: Condensin Subunit ScpA; Smc Operon Protein; Segregation And Condensation Protein ScpA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MAEEIPDGKLEEPVEILYQLAKRGEIDPWNIDIVAVTERFLTELERRRELDLMISGRTIFYASVLLRMKSELLDGLEDDG GCDEDISEEGLDPFSEDDVITERALGPIELLEREIDRRLKRKDARKRPVTLYELIKQLKLAEKAERRRQRRRRCIDSEDE LFEEPDADEVVGIAHDEDYERMAGRIYALVETHPDARDPGVSLHELALTLHWPVYFVYLPCLFLVQSGRVDLEQDEFFGD LWVVIQDGYTEKS
Sequences:
>Translated_253_residues MAEEIPDGKLEEPVEILYQLAKRGEIDPWNIDIVAVTERFLTELERRRELDLMISGRTIFYASVLLRMKSELLDGLEDDG GCDEDISEEGLDPFSEDDVITERALGPIELLEREIDRRLKRKDARKRPVTLYELIKQLKLAEKAERRRQRRRRCIDSEDE LFEEPDADEVVGIAHDEDYERMAGRIYALVETHPDARDPGVSLHELALTLHWPVYFVYLPCLFLVQSGRVDLEQDEFFGD LWVVIQDGYTEKS >Mature_252_residues AEEIPDGKLEEPVEILYQLAKRGEIDPWNIDIVAVTERFLTELERRRELDLMISGRTIFYASVLLRMKSELLDGLEDDGG CDEDISEEGLDPFSEDDVITERALGPIELLEREIDRRLKRKDARKRPVTLYELIKQLKLAEKAERRRQRRRRCIDSEDEL FEEPDADEVVGIAHDEDYERMAGRIYALVETHPDARDPGVSLHELALTLHWPVYFVYLPCLFLVQSGRVDLEQDEFFGDL WVVIQDGYTEKS
Specific function: Unknown
COG id: COG1354
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29496; Mature: 29364
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEEIPDGKLEEPVEILYQLAKRGEIDPWNIDIVAVTERFLTELERRRELDLMISGRTIF CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEECCCHHH YASVLLRMKSELLDGLEDDGGCDEDISEEGLDPFSEDDVITERALGPIELLEREIDRRLK HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHH RKDARKRPVTLYELIKQLKLAEKAERRRQRRRRCIDSEDELFEEPDADEVVGIAHDEDYE HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHEEECCCCCHHH RMAGRIYALVETHPDARDPGVSLHELALTLHWPVYFVYLPCLFLVQSGRVDLEQDEFFGD HHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCE LWVVIQDGYTEKS EEEEEECCCCCCC >Mature Secondary Structure AEEIPDGKLEEPVEILYQLAKRGEIDPWNIDIVAVTERFLTELERRRELDLMISGRTIF CCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCEEECCCHHH YASVLLRMKSELLDGLEDDGGCDEDISEEGLDPFSEDDVITERALGPIELLEREIDRRLK HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHH RKDARKRPVTLYELIKQLKLAEKAERRRQRRRRCIDSEDELFEEPDADEVVGIAHDEDYE HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHEEECCCCCHHH RMAGRIYALVETHPDARDPGVSLHELALTLHWPVYFVYLPCLFLVQSGRVDLEQDEFFGD HHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCE LWVVIQDGYTEKS EEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA