| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is mhpE [C]
Identifier: 124485807
GI number: 124485807
Start: 988895
End: 989929
Strand: Reverse
Name: mhpE [C]
Synonym: Mlab_0987
Alternate gene names: 124485807
Gene position: 989929-988895 (Counterclockwise)
Preceding gene: 162319793
Following gene: 124485805
Centisome position: 54.84
GC content: 52.37
Gene sequence:
>1035_bases ATGGAAATACTAGATACAACCATTAGGGACGGGGGATATGCAGTTGATTTCAACTTCTCCTGTTCAGACGTTAGAAACAT CTCTTCCAAGCTGGAAGGGATGGGCATAGGATTGATCGAAATCGGACACGGGATGGGACTGAACGCCAGTTCTCCCAAAA ACGGCATCGCCGCCCAGACCGACGAGGAATACATGCGTGCGGCCGGAGAGGTGCTGACGAAATCCAAATTCGGAATGTTC TGCATTCCGGGCATCGCACGACTGGAGGATCTGCAGCTCGCCGTCGACTGCGGGGCCTCGTTTATCAGGGTCGGCATCAA TGCGGATCAGATCCCGCTGACCGAACCGTACATCCGCGAAGCAAAAGACCTCGGCTTAACGGTGATGACGAACTACATGA AGTCGTATGTTCTCACACCCGACGAGTTTGCGCAAAACGTCATGCTTTCAGAAAAATACGGGGCAGACTGCGTGTATATC GTCGACTCGGCCGGGGGCATGTTCCCGGGCGAAATACAGGAATATTATGATACCATACGCGAATATTCCAGCATCCAGCT CGGATTTCACGGGCACAACAATCTCGGACTCGCCGTTGCAAACAGCGTGTACTGTGCAAAGCTCGGATTCGATTTCATCG ACTGCTCGCTGCAGGGGCTTGGACGAAGTTCCGGCAACGCCTGCACGGAAATGTTTCTCGCGATCCTTGAGAAAAACGGA TACCGGACCGATGTGGATCTCGTGGAATTATTTTCGGCGGGATACGATCTTCTCCGGCCGATCACGAATAAAGACCTCAC CGATCCGCTTGATTACGTCTGCGGATATGCCGGGTTCCACACCAGTTATCTCAATCAGATCAACACCTGCGCAGAAGAGT TCGATGTGAATCCGTTCCGTCTGATCATCGAGTACTCGAAGTACGATCAGGCCAATATGGATTACGATAAACTCTGCAGC ATGGCGATGACGATGCAGAAAAACTCCCGTCTGCGGCAGCTCGACCACCCGATCTGTCCAAACTGTGCAAGCTGA
Upstream 100 bases:
>100_bases ACCAATTGATCAAAAAAGATGCGGAAATACCAAGGTATTCAGCATTGTGCTGTAACCATTTAAGGTACCGAGCCGATCAT GCGTAACGGGAAAGGGATTC
Downstream 100 bases:
>100_bases GTCTTGCCTGGACCACACCTCACAATTTTGAAAAAATTATTTTTCCTTCTCGATGAGAAGGACCCGCGCCGGTGCTCCGT CGCTGTCTTTGATCTTCATC
Product: hypothetical protein
Products: NA
Alternate protein names: HOA 2; 4-hydroxy-2-keto-pentanoic acid aldolase 2; 4-hydroxy-2-oxopentanoate aldolase 2 [H]
Number of amino acids: Translated: 344; Mature: 344
Protein sequence:
>344_residues MEILDTTIRDGGYAVDFNFSCSDVRNISSKLEGMGIGLIEIGHGMGLNASSPKNGIAAQTDEEYMRAAGEVLTKSKFGMF CIPGIARLEDLQLAVDCGASFIRVGINADQIPLTEPYIREAKDLGLTVMTNYMKSYVLTPDEFAQNVMLSEKYGADCVYI VDSAGGMFPGEIQEYYDTIREYSSIQLGFHGHNNLGLAVANSVYCAKLGFDFIDCSLQGLGRSSGNACTEMFLAILEKNG YRTDVDLVELFSAGYDLLRPITNKDLTDPLDYVCGYAGFHTSYLNQINTCAEEFDVNPFRLIIEYSKYDQANMDYDKLCS MAMTMQKNSRLRQLDHPICPNCAS
Sequences:
>Translated_344_residues MEILDTTIRDGGYAVDFNFSCSDVRNISSKLEGMGIGLIEIGHGMGLNASSPKNGIAAQTDEEYMRAAGEVLTKSKFGMF CIPGIARLEDLQLAVDCGASFIRVGINADQIPLTEPYIREAKDLGLTVMTNYMKSYVLTPDEFAQNVMLSEKYGADCVYI VDSAGGMFPGEIQEYYDTIREYSSIQLGFHGHNNLGLAVANSVYCAKLGFDFIDCSLQGLGRSSGNACTEMFLAILEKNG YRTDVDLVELFSAGYDLLRPITNKDLTDPLDYVCGYAGFHTSYLNQINTCAEEFDVNPFRLIIEYSKYDQANMDYDKLCS MAMTMQKNSRLRQLDHPICPNCAS >Mature_344_residues MEILDTTIRDGGYAVDFNFSCSDVRNISSKLEGMGIGLIEIGHGMGLNASSPKNGIAAQTDEEYMRAAGEVLTKSKFGMF CIPGIARLEDLQLAVDCGASFIRVGINADQIPLTEPYIREAKDLGLTVMTNYMKSYVLTPDEFAQNVMLSEKYGADCVYI VDSAGGMFPGEIQEYYDTIREYSSIQLGFHGHNNLGLAVANSVYCAKLGFDFIDCSLQGLGRSSGNACTEMFLAILEKNG YRTDVDLVELFSAGYDLLRPITNKDLTDPLDYVCGYAGFHTSYLNQINTCAEEFDVNPFRLIIEYSKYDQANMDYDKLCS MAMTMQKNSRLRQLDHPICPNCAS
Specific function: Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta-cleavage pathway for the degradation of aromatic compounds [H]
COG id: COG0119
COG function: function code E; Isopropylmalate/homocitrate/citramalate synthases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 4-hydroxy-2-oxovalerate aldolase family [H]
Homologues:
Organism=Escherichia coli, GI1786548, Length=330, Percent_Identity=33.030303030303, Blast_Score=192, Evalue=2e-50,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017629 - InterPro: IPR013785 - InterPro: IPR012425 - InterPro: IPR000891 - ProDom: PD005364 [H]
Pfam domain/function: PF07836 DmpG_comm; PF00682 HMGL-like [H]
EC number: =4.1.3.39 [H]
Molecular weight: Translated: 38036; Mature: 38036
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: PS50991 PYR_CT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 7.6 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 7.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEILDTTIRDGGYAVDFNFSCSDVRNISSKLEGMGIGLIEIGHGMGLNASSPKNGIAAQT CCCCCCHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC DEEYMRAAGEVLTKSKFGMFCIPGIARLEDLQLAVDCGASFIRVGINADQIPLTEPYIRE HHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHH AKDLGLTVMTNYMKSYVLTPDEFAQNVMLSEKYGADCVYIVDSAGGMFPGEIQEYYDTIR HHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH EYSSIQLGFHGHNNLGLAVANSVYCAKLGFDFIDCSLQGLGRSSGNACTEMFLAILEKNG HHCCEEEEECCCCCCCEEECCCEEEHHHCCHHEEHHHHHCCCCCCHHHHHHHHHHHHCCC YRTDVDLVELFSAGYDLLRPITNKDLTDPLDYVCGYAGFHTSYLNQINTCAEEFDVNPFR CCCCHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE LIIEYSKYDQANMDYDKLCSMAMTMQKNSRLRQLDHPICPNCAS EEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC >Mature Secondary Structure MEILDTTIRDGGYAVDFNFSCSDVRNISSKLEGMGIGLIEIGHGMGLNASSPKNGIAAQT CCCCCCHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC DEEYMRAAGEVLTKSKFGMFCIPGIARLEDLQLAVDCGASFIRVGINADQIPLTEPYIRE HHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHH AKDLGLTVMTNYMKSYVLTPDEFAQNVMLSEKYGADCVYIVDSAGGMFPGEIQEYYDTIR HHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH EYSSIQLGFHGHNNLGLAVANSVYCAKLGFDFIDCSLQGLGRSSGNACTEMFLAILEKNG HHCCEEEEECCCCCCCEEECCCEEEHHHCCHHEEHHHHHCCCCCCHHHHHHHHHHHHCCC YRTDVDLVELFSAGYDLLRPITNKDLTDPLDYVCGYAGFHTSYLNQINTCAEEFDVNPFR CCCCHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE LIIEYSKYDQANMDYDKLCSMAMTMQKNSRLRQLDHPICPNCAS EEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA