| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is yjiL [C]
Identifier: 124485376
GI number: 124485376
Start: 524791
End: 526053
Strand: Reverse
Name: yjiL [C]
Synonym: Mlab_0551
Alternate gene names: 124485376
Gene position: 526053-524791 (Counterclockwise)
Preceding gene: 124485377
Following gene: 124485375
Centisome position: 29.14
GC content: 55.66
Gene sequence:
>1263_bases ATGAGCGCAAAAGAACAACCCGTACGGATCGCCCAGATCACCTGCGGCGCAGAATACAGTGGAATCCAAAACGAAATCAC TTCGGCGGCGGAGACCGTCGGCGCAAAGATGTTTTACCCGGACGTTGCCTTAAAGGACGTCAAACGGGCCTACAAGGACT TCGGCCTTCCGGTGAAAAGCCCGGATCTGAAACTCGCCATCGCCCGTGCCCAGGCGATCGTTGAAGGAAGAATCGAGGCG GACGGAATCTTCATCGCAAGCTGCTTCAGGTGTGCCGAGGCGGCAATCGTCCGTAACGAACTCCGCAGATACATCGTGGA AAACTCGAAGATACCGGTCGTCTCCTACTCGTTCAACGAGCGGACCGGCGCATCCACTCTTCTGACAAGGCTCGAAGCCT TATCCACGATCGCAAAACGCCGGGCACTGATGGCCCGCGAGGTCCAGGTCGGGACTACGATGGGTGTCGACTCCGGATCA TCGACCACCAAATGCATAATCATGCAGGACAACGAGATCATCGGAACCGGCTGGAGACCGACCACCGATGTTCTGAAAAG TGCTGACGACGTCGTGTCCCTGGCATTAAAGGAGTCTGGACTCAAACTCTCCGACATTGAGGCAATTGGAACAACCGGAT ACGGAAGGTTCCTGGTCGGCAAACACATCAAAGCCGATCTTATCCAGGAAGAACTCACCGTCAACTCCAAAGGAGCGGTA TATCTTGCAAACGCCCAGAAAGGATTTGCCACCGTGATTGATATCGGCGGTATGGATAACAAGGCCATCAGCGTAAAAGA CGGAATCCCCGGTTCCTTTACGATGGGGGGTATCTGCGCCGGAGCATCGGGACGGTTCCTCGAAATGACGTCCAAACGCC TTGGAATCGACATCACCGAACTCGGCGCACTCTCGATGGAAAGCGAAGGCGGCGAGAATGTCCCGATGAACAGTTATTGT ATCGTCTTTGGAACGCAGTCTCTCGTCAATGCTTTGGCGGCTGGATACAAACCCGCAGATGTTGCCGCGGCGGCGTGTCA CAGTGTAGCTCAGCAGGTGTACGAACAGCAGCTCCAGGAAGTCGATATCAAAGAGCCGGTCATCATGGTCGGGGGATCAT CGCTTATTCAGGGACTTGTCCGGGCAATGGGCCGGATGCTCAGAACCGAGGTCGTCGTGCCCCATCACGCCCAGTACATC GGGGCGGTCGGCGGGGCACTGCTTTCCTCGGGATTCGTCGATAAAAAGGTGAAGGAGGCGTAA
Upstream 100 bases:
>100_bases AGATGCCCAAACTGGAACTGAGATATCCGGCATCCAAAGAAGAGGGCGTGACGTTCGTTGCAAAAATCAAACAGTTCTTA AACGAGCTGGAGGTCAAAAA
Downstream 100 bases:
>100_bases ATGGCTGGTTTGGACTACTTCGAGGTGGAATGCACCGAAGACGGGTCGGACAACTATATCAAAATCGCCACAACCGTACT GCAGGATCACAACCTCCTCA
Product: NADPH-dependent F420 reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 420; Mature: 419
Protein sequence:
>420_residues MSAKEQPVRIAQITCGAEYSGIQNEITSAAETVGAKMFYPDVALKDVKRAYKDFGLPVKSPDLKLAIARAQAIVEGRIEA DGIFIASCFRCAEAAIVRNELRRYIVENSKIPVVSYSFNERTGASTLLTRLEALSTIAKRRALMAREVQVGTTMGVDSGS STTKCIIMQDNEIIGTGWRPTTDVLKSADDVVSLALKESGLKLSDIEAIGTTGYGRFLVGKHIKADLIQEELTVNSKGAV YLANAQKGFATVIDIGGMDNKAISVKDGIPGSFTMGGICAGASGRFLEMTSKRLGIDITELGALSMESEGGENVPMNSYC IVFGTQSLVNALAAGYKPADVAAAACHSVAQQVYEQQLQEVDIKEPVIMVGGSSLIQGLVRAMGRMLRTEVVVPHHAQYI GAVGGALLSSGFVDKKVKEA
Sequences:
>Translated_420_residues MSAKEQPVRIAQITCGAEYSGIQNEITSAAETVGAKMFYPDVALKDVKRAYKDFGLPVKSPDLKLAIARAQAIVEGRIEA DGIFIASCFRCAEAAIVRNELRRYIVENSKIPVVSYSFNERTGASTLLTRLEALSTIAKRRALMAREVQVGTTMGVDSGS STTKCIIMQDNEIIGTGWRPTTDVLKSADDVVSLALKESGLKLSDIEAIGTTGYGRFLVGKHIKADLIQEELTVNSKGAV YLANAQKGFATVIDIGGMDNKAISVKDGIPGSFTMGGICAGASGRFLEMTSKRLGIDITELGALSMESEGGENVPMNSYC IVFGTQSLVNALAAGYKPADVAAAACHSVAQQVYEQQLQEVDIKEPVIMVGGSSLIQGLVRAMGRMLRTEVVVPHHAQYI GAVGGALLSSGFVDKKVKEA >Mature_419_residues SAKEQPVRIAQITCGAEYSGIQNEITSAAETVGAKMFYPDVALKDVKRAYKDFGLPVKSPDLKLAIARAQAIVEGRIEAD GIFIASCFRCAEAAIVRNELRRYIVENSKIPVVSYSFNERTGASTLLTRLEALSTIAKRRALMAREVQVGTTMGVDSGSS TTKCIIMQDNEIIGTGWRPTTDVLKSADDVVSLALKESGLKLSDIEAIGTTGYGRFLVGKHIKADLIQEELTVNSKGAVY LANAQKGFATVIDIGGMDNKAISVKDGIPGSFTMGGICAGASGRFLEMTSKRLGIDITELGALSMESEGGENVPMNSYCI VFGTQSLVNALAAGYKPADVAAAACHSVAQQVYEQQLQEVDIKEPVIMVGGSSLIQGLVRAMGRMLRTEVVVPHHAQYIG AVGGALLSSGFVDKKVKEA
Specific function: Unknown
COG id: COG1924
COG function: function code I; Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082426, Length=265, Percent_Identity=31.6981132075472, Blast_Score=105, Evalue=4e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002731 - InterPro: IPR008275 - InterPro: IPR017676 [H]
Pfam domain/function: PF01869 BcrAD_BadFG [H]
EC number: NA
Molecular weight: Translated: 44655; Mature: 44524
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAKEQPVRIAQITCGAEYSGIQNEITSAAETVGAKMFYPDVALKDVKRAYKDFGLPVKS CCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHCCCCCCC PDLKLAIARAQAIVEGRIEADGIFIASCFRCAEAAIVRNELRRYIVENSKIPVVSYSFNE CCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC RTGASTLLTRLEALSTIAKRRALMAREVQVGTTMGVDSGSSTTKCIIMQDNEIIGTGWRP CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEEECCEEEECCCCC TTDVLKSADDVVSLALKESGLKLSDIEAIGTTGYGRFLVGKHIKADLIQEELTVNSKGAV HHHHHHCHHHHHHHHHHHCCCEEEHHHECCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCE YLANAQKGFATVIDIGGMDNKAISVKDGIPGSFTMGGICAGASGRFLEMTSKRLGIDITE EEECCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEECCCCCCCEEHHHHHCCCHHH LGALSMESEGGENVPMNSYCIVFGTQSLVNALAAGYKPADVAAAACHSVAQQVYEQQLQE HCCEEECCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH VDIKEPVIMVGGSSLIQGLVRAMGRMLRTEVVVPHHAQYIGAVGGALLSSGFVDKKVKEA CCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHCC >Mature Secondary Structure SAKEQPVRIAQITCGAEYSGIQNEITSAAETVGAKMFYPDVALKDVKRAYKDFGLPVKS CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHCCCCCCC PDLKLAIARAQAIVEGRIEADGIFIASCFRCAEAAIVRNELRRYIVENSKIPVVSYSFNE CCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC RTGASTLLTRLEALSTIAKRRALMAREVQVGTTMGVDSGSSTTKCIIMQDNEIIGTGWRP CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEEECCEEEECCCCC TTDVLKSADDVVSLALKESGLKLSDIEAIGTTGYGRFLVGKHIKADLIQEELTVNSKGAV HHHHHHCHHHHHHHHHHHCCCEEEHHHECCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCE YLANAQKGFATVIDIGGMDNKAISVKDGIPGSFTMGGICAGASGRFLEMTSKRLGIDITE EEECCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEECCCCCCCEEHHHHHCCCHHH LGALSMESEGGENVPMNSYCIVFGTQSLVNALAAGYKPADVAAAACHSVAQQVYEQQLQE HCCEEECCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH VDIKEPVIMVGGSSLIQGLVRAMGRMLRTEVVVPHHAQYIGAVGGALLSSGFVDKKVKEA CCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]