| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
Click here to switch to the map view.
The map label for this gene is 124485299
Identifier: 124485299
GI number: 124485299
Start: 450601
End: 451371
Strand: Reverse
Name: 124485299
Synonym: Mlab_0474
Alternate gene names: NA
Gene position: 451371-450601 (Counterclockwise)
Preceding gene: 124485300
Following gene: 124485298
Centisome position: 25.01
GC content: 52.4
Gene sequence:
>771_bases ATGCCCGATTTTCAGTGTCCAAAGTGCGGCGCAGCACTTCAGGTCAAACCAGGCACACAGATGGCGACCTGCTCATTCTG TGGCACGGTCACTTATATCGATCGAAGTTCTGCGCTGTTCTTTTATCTGCTCCCCTTCTCCATAAACGAGGGTGCAGCAA AAGGGATTTTTAAACGCTGGACTGCCGGCCCGGCGCAGGCAAAAGATCTCGAGTCAGCAGCCAGGATTACGAAACTCACC AAAGAGTTCTTCCCGGTGTTCCGGTTCCGCCGGACAATAAACGGCAGGGAAACCGTTTTTGCAAAACCTGCGAAAGGGAC ACTCCTTCCTGGAATGCAGGACCTCACGATTCCTCCGGGAAACGTTGTCGTCTATGATGCGAAAGCCTCGACCGGGGACG CAGACGTGATCCAGCCGGATATTGCAATCGATTCGTATCTTCCGGAACTCGCCGGAACCCCCATCGACCAGGCACTCGTG TATTTCCCGATTTACGAAATCTCCTATGAATATCAGGGAGCTTCCTACCAGGCAGTCATCGACGGATCATCCGGAGCAGT CTATACTACCTCGTCTCCCACCCGCAGTTCCAGTGCATACATCGCGGTCATGGGACTTGCCTTCACCTTAGGCCTTCTTG GAAGTATTCTCGGCGTAATGGTGAATCCGATATTTTTCGTTCTGATCATTGCCGGATTTTTCGCAGGAAAACTTCTTGCA GGCAAAGTGGTCGAACGGCAGAAACCCGCTAAGGAGGTGAAGGCAGAATGA
Upstream 100 bases:
>100_bases TGGTGCTGTTGAGAAAAAAACGGCCTGCATTCTCCGAATCAACGATCTGTAGAGCGTATCGGGAAGATATCCTTATCCTC TAAGACACCAAGAAAAATAT
Downstream 100 bases:
>100_bases GCGAAGCACAGAAGATCCTTGTTTCAATGACCTGTCCGTCATGCGGAGGTCAGGTTCAGTGCGAAGAAGGAGAGGATCTA GTCCTCTGCAAGTTCTGTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MPDFQCPKCGAALQVKPGTQMATCSFCGTVTYIDRSSALFFYLLPFSINEGAAKGIFKRWTAGPAQAKDLESAARITKLT KEFFPVFRFRRTINGRETVFAKPAKGTLLPGMQDLTIPPGNVVVYDAKASTGDADVIQPDIAIDSYLPELAGTPIDQALV YFPIYEISYEYQGASYQAVIDGSSGAVYTTSSPTRSSSAYIAVMGLAFTLGLLGSILGVMVNPIFFVLIIAGFFAGKLLA GKVVERQKPAKEVKAE
Sequences:
>Translated_256_residues MPDFQCPKCGAALQVKPGTQMATCSFCGTVTYIDRSSALFFYLLPFSINEGAAKGIFKRWTAGPAQAKDLESAARITKLT KEFFPVFRFRRTINGRETVFAKPAKGTLLPGMQDLTIPPGNVVVYDAKASTGDADVIQPDIAIDSYLPELAGTPIDQALV YFPIYEISYEYQGASYQAVIDGSSGAVYTTSSPTRSSSAYIAVMGLAFTLGLLGSILGVMVNPIFFVLIIAGFFAGKLLA GKVVERQKPAKEVKAE >Mature_255_residues PDFQCPKCGAALQVKPGTQMATCSFCGTVTYIDRSSALFFYLLPFSINEGAAKGIFKRWTAGPAQAKDLESAARITKLTK EFFPVFRFRRTINGRETVFAKPAKGTLLPGMQDLTIPPGNVVVYDAKASTGDADVIQPDIAIDSYLPELAGTPIDQALVY FPIYEISYEYQGASYQAVIDGSSGAVYTTSSPTRSSSAYIAVMGLAFTLGLLGSILGVMVNPIFFVLIIAGFFAGKLLAG KVVERQKPAKEVKAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27515; Mature: 27384
Theoretical pI: Translated: 8.56; Mature: 8.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDFQCPKCGAALQVKPGTQMATCSFCGTVTYIDRSSALFFYLLPFSINEGAAKGIFKRW CCCCCCCCCCCEEEECCCCCEEEEECCCEEEEEECCCEEEEEEEEEECCCCHHHHHHHHH TAGPAQAKDLESAARITKLTKEFFPVFRFRRTINGRETVFAKPAKGTLLPGMQDLTIPPG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC NVVVYDAKASTGDADVIQPDIAIDSYLPELAGTPIDQALVYFPIYEISYEYQGASYQAVI CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHEEEEEEEEEEEEECCCEEEEEE DGSSGAVYTTSSPTRSSSAYIAVMGLAFTLGLLGSILGVMVNPIFFVLIIAGFFAGKLLA ECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKVVERQKPAKEVKAE HHHHHHCCCHHHHCCC >Mature Secondary Structure PDFQCPKCGAALQVKPGTQMATCSFCGTVTYIDRSSALFFYLLPFSINEGAAKGIFKRW CCCCCCCCCCEEEECCCCCEEEEECCCEEEEEECCCEEEEEEEEEECCCCHHHHHHHHH TAGPAQAKDLESAARITKLTKEFFPVFRFRRTINGRETVFAKPAKGTLLPGMQDLTIPPG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC NVVVYDAKASTGDADVIQPDIAIDSYLPELAGTPIDQALVYFPIYEISYEYQGASYQAVI CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHEEEEEEEEEEEEECCCEEEEEE DGSSGAVYTTSSPTRSSSAYIAVMGLAFTLGLLGSILGVMVNPIFFVLIIAGFFAGKLLA ECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GKVVERQKPAKEVKAE HHHHHHCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA