Click here to switch to the map view.

The map label for this gene is rpoM [H]

Identifier: 124485273

GI number: 124485273

Start: 429560

End: 429850

Strand: Reverse

Name: rpoM [H]

Synonym: Mlab_0448

Alternate gene names: 124485273

Gene position: 429850-429560 (Counterclockwise)

Preceding gene: 124485279

Following gene: 124485272

Centisome position: 23.81

GC content: 47.42

Gene sequence:

>291_bases
ATGAAATCAAAAGACGGACAGCTCTGCTGTTCAAAATGTGGATATACCGAAACCATCACCGCCGAAAATAAGGAGCAGAT
GAAAAAAGTCGCTTACATGCAGGAAAACGACATTCTGATCGTGGAAGAAGGCGCGGATATGGGAACCAAACCAACAATCG
CCATCAAATGTCCAAACTGCGGTCACGGCATCGCCGAGTGGTGGCTCCGCCAGTTACGCAGTGCTGATGAATCCGAAGTA
AGATTCTTCCGCTGCACGAAATGCAAACATACCTGGCGTGAATACGATTAA

Upstream 100 bases:

>100_bases
AATGGGTTTGCCAGCCGAACCTGCCGGCTTCATAAGGCTATTTAACGTTGAAAAACCAATAGTGTATTCTATGATGTTCT
GCCCAACATGCGGGAAGCTG

Downstream 100 bases:

>100_bases
GCATATTTTCCCCCTCTTTTTTTAAGCAACCCACACGAGTATTTATATACTAACCTGTATTAACTTATAAATATGTCAAA
CCTTCCCGAAGACTCGCTGA

Product: DNA-directed RNA polymerase, subunit M

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 96

Protein sequence:

>96_residues
MKSKDGQLCCSKCGYTETITAENKEQMKKVAYMQENDILIVEEGADMGTKPTIAIKCPNCGHGIAEWWLRQLRSADESEV
RFFRCTKCKHTWREYD

Sequences:

>Translated_96_residues
MKSKDGQLCCSKCGYTETITAENKEQMKKVAYMQENDILIVEEGADMGTKPTIAIKCPNCGHGIAEWWLRQLRSADESEV
RFFRCTKCKHTWREYD
>Mature_96_residues
MKSKDGQLCCSKCGYTETITAENKEQMKKVAYMQENDILIVEEGADMGTKPTIAIKCPNCGHGIAEWWLRQLRSADESEV
RFFRCTKCKHTWREYD

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1594

COG function: function code K; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TFIIS-type zinc finger [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019761
- InterPro:   IPR001529
- InterPro:   IPR006288
- InterPro:   IPR001222 [H]

Pfam domain/function: PF02150 RNA_POL_M_15KD; PF01096 TFIIS_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 11114; Mature: 11114

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS00466 ZF_TFIIS_1 ; PS51133 ZF_TFIIS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
11.5 %Cys+Met (Translated Protein)
7.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
11.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKDGQLCCSKCGYTETITAENKEQMKKVAYMQENDILIVEEGADMGTKPTIAIKCPNC
CCCCCCCCHHHHCCCCEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCC
GHGIAEWWLRQLRSADESEVRFFRCTKCKHTWREYD
CCHHHHHHHHHHCCCCCCHHHEEECCCHHHHHCCCC
>Mature Secondary Structure
MKSKDGQLCCSKCGYTETITAENKEQMKKVAYMQENDILIVEEGADMGTKPTIAIKCPNC
CCCCCCCCHHHHCCCCEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCC
GHGIAEWWLRQLRSADESEVRFFRCTKCKHTWREYD
CCHHHHHHHHHHCCCCCCHHHEEECCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]