| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485108
Identifier: 124485108
GI number: 124485108
Start: 261028
End: 262326
Strand: Reverse
Name: 124485108
Synonym: Mlab_0281
Alternate gene names: NA
Gene position: 262326-261028 (Counterclockwise)
Preceding gene: 124485111
Following gene: 124485104
Centisome position: 14.53
GC content: 45.34
Gene sequence:
>1299_bases ATGACAGAAACAAGAACCAAAACTGCAAAATCTCCGATTATATTCATACCCGGCATTATGGGCAGCCGGCTTTATGATCA GACCGGCAGTCTTGTCTGGGTTGAATATTCGCTCAAACTTACAAAACTCGGCGAGATGATGGGGATGCAAAATACCCTGA CGGTAAAAAACAACGAAATCGATCAGGTGATCCTCCCGGAAAATCAGCGTGAATACGGAGCTTTGGGACCGTTCGAATAC CCCTATAAAAAAATCGTTGACCTGCTCTGTGACGTATTCCCGGAAAATGGTGTCTACTTTTATTCCTATGATTTTCGTCA GACCATAGCAGACTCCGCCGATCTGTTACATAACCAGATTCAAAACATCCAAAATATTACCGGCGAAGCCAAGGTCGATC TTATTGCCCACAGTCTCGGCGGGCTGATCGTTTCAGCATATCTCGAAGGTTACGGAAATGAAAATATTGAAAAAGCCATT ATCCTTGCGACCCCCTATGAAGGCTCCCCTGACACGATAAACACGGCATTGACCGGTGAAATGACGTACATTCCAGGAAG TGTGCTTGATACAGTAACGAAAATTACCAGGGATGTACGGACAAGTTTTCCCTCGGCCGCGGAACTTATTCCAACCGATG CCTATACAGGCCTTCATCCGCCATATCTCTACACGGAAAATATTCCATTCAGCGATGACATGAGGGAGAGGGAAAACATA TTTTCTGAGGGGGAGCCGTATTATACCCCGGCAGGGATTACACGGGAGGCCGGTGTGAATGTGTACAATCCGATTCCCGG GAATCAGTATGAGATGATTCTGAAAAAAATCTTTGGCGAAGAGCAGACCCTCAGACGAGAAAACAACAGCCGGATCATCA CCGATCTCGAAAGATCATACTTTGCTGTCGGTATCAACCGCCAGACCATCCGGTCACTGATGTTTTCAGATGACCCGTTG AATCCCGAGATAACTCACATAATATATGATCATGCAGGTGATGGATCAGTTCCCGAGGAGTCGGCAACCATGTATGGGTA TCTGGAAACGCTTGGAAAAGACCAGAAAGGAAACAGCCGTCTGTTAAAGATAGATACAGAACATGGAGGGATCACGAATC ATGGAAAAGTCTTGGATTGGATCGTTGCCATTCTTTCAGATGTTCCGACTGACCATATCCAGTCGGATCCTACCATCGAA GACAACACGGTCATGGTGAAGATCGCAGGACATCAGGAAATACTTTCGAAACTACATAAACTCGTTACTTCAATGAAAAA TCAGAAAAACACTCAATAA
Upstream 100 bases:
>100_bases CCCGGGATATATTCATTACCCCCAATAACCATACATTCACTCGTGCGAGACACAGAGCCTCGCTGTATTACTCATCATTC CAAGAGGCATTCCAGATATC
Downstream 100 bases:
>100_bases AATAAAAAAAATTATTTTGCCATGATCTCCATCACAATCTTACCATAGGCAGGACGTGTAAGAAGAACACCGATCAGGAT ACCGAGGATACTGATGATGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 432; Mature: 431
Protein sequence:
>432_residues MTETRTKTAKSPIIFIPGIMGSRLYDQTGSLVWVEYSLKLTKLGEMMGMQNTLTVKNNEIDQVILPENQREYGALGPFEY PYKKIVDLLCDVFPENGVYFYSYDFRQTIADSADLLHNQIQNIQNITGEAKVDLIAHSLGGLIVSAYLEGYGNENIEKAI ILATPYEGSPDTINTALTGEMTYIPGSVLDTVTKITRDVRTSFPSAAELIPTDAYTGLHPPYLYTENIPFSDDMRERENI FSEGEPYYTPAGITREAGVNVYNPIPGNQYEMILKKIFGEEQTLRRENNSRIITDLERSYFAVGINRQTIRSLMFSDDPL NPEITHIIYDHAGDGSVPEESATMYGYLETLGKDQKGNSRLLKIDTEHGGITNHGKVLDWIVAILSDVPTDHIQSDPTIE DNTVMVKIAGHQEILSKLHKLVTSMKNQKNTQ
Sequences:
>Translated_432_residues MTETRTKTAKSPIIFIPGIMGSRLYDQTGSLVWVEYSLKLTKLGEMMGMQNTLTVKNNEIDQVILPENQREYGALGPFEY PYKKIVDLLCDVFPENGVYFYSYDFRQTIADSADLLHNQIQNIQNITGEAKVDLIAHSLGGLIVSAYLEGYGNENIEKAI ILATPYEGSPDTINTALTGEMTYIPGSVLDTVTKITRDVRTSFPSAAELIPTDAYTGLHPPYLYTENIPFSDDMRERENI FSEGEPYYTPAGITREAGVNVYNPIPGNQYEMILKKIFGEEQTLRRENNSRIITDLERSYFAVGINRQTIRSLMFSDDPL NPEITHIIYDHAGDGSVPEESATMYGYLETLGKDQKGNSRLLKIDTEHGGITNHGKVLDWIVAILSDVPTDHIQSDPTIE DNTVMVKIAGHQEILSKLHKLVTSMKNQKNTQ >Mature_431_residues TETRTKTAKSPIIFIPGIMGSRLYDQTGSLVWVEYSLKLTKLGEMMGMQNTLTVKNNEIDQVILPENQREYGALGPFEYP YKKIVDLLCDVFPENGVYFYSYDFRQTIADSADLLHNQIQNIQNITGEAKVDLIAHSLGGLIVSAYLEGYGNENIEKAII LATPYEGSPDTINTALTGEMTYIPGSVLDTVTKITRDVRTSFPSAAELIPTDAYTGLHPPYLYTENIPFSDDMRERENIF SEGEPYYTPAGITREAGVNVYNPIPGNQYEMILKKIFGEEQTLRRENNSRIITDLERSYFAVGINRQTIRSLMFSDDPLN PEITHIIYDHAGDGSVPEESATMYGYLETLGKDQKGNSRLLKIDTEHGGITNHGKVLDWIVAILSDVPTDHIQSDPTIED NTVMVKIAGHQEILSKLHKLVTSMKNQKNTQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48451; Mature: 48320
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTETRTKTAKSPIIFIPGIMGSRLYDQTGSLVWVEYSLKLTKLGEMMGMQNTLTVKNNEI CCCCCCCCCCCCEEEECCCCCCHHHHCCCCEEEEEEEEEHHHHHHHHCCCCEEEEECCCC DQVILPENQREYGALGPFEYPYKKIVDLLCDVFPENGVYFYSYDFRQTIADSADLLHNQI CEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHH QNIQNITGEAKVDLIAHSLGGLIVSAYLEGYGNENIEKAIILATPYEGSPDTINTALTGE HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEECCC MTYIPGSVLDTVTKITRDVRTSFPSAAELIPTDAYTGLHPPYLYTENIPFSDDMRERENI EEECCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHH FSEGEPYYTPAGITREAGVNVYNPIPGNQYEMILKKIFGEEQTLRRENNSRIITDLERSY HCCCCCEECCCCCCHHCCCCEECCCCCCHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCE FAVGINRQTIRSLMFSDDPLNPEITHIIYDHAGDGSVPEESATMYGYLETLGKDQKGNSR EEECCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCE LLKIDTEHGGITNHGKVLDWIVAILSDVPTDHIQSDPTIEDNTVMVKIAGHQEILSKLHK EEEEECCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEEEECCHHHHHHHHHH LVTSMKNQKNTQ HHHHHHHCCCCC >Mature Secondary Structure TETRTKTAKSPIIFIPGIMGSRLYDQTGSLVWVEYSLKLTKLGEMMGMQNTLTVKNNEI CCCCCCCCCCCEEEECCCCCCHHHHCCCCEEEEEEEEEHHHHHHHHCCCCEEEEECCCC DQVILPENQREYGALGPFEYPYKKIVDLLCDVFPENGVYFYSYDFRQTIADSADLLHNQI CEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHH QNIQNITGEAKVDLIAHSLGGLIVSAYLEGYGNENIEKAIILATPYEGSPDTINTALTGE HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEECCC MTYIPGSVLDTVTKITRDVRTSFPSAAELIPTDAYTGLHPPYLYTENIPFSDDMRERENI EEECCHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCHHHHHHH FSEGEPYYTPAGITREAGVNVYNPIPGNQYEMILKKIFGEEQTLRRENNSRIITDLERSY HCCCCCEECCCCCCHHCCCCEECCCCCCHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCE FAVGINRQTIRSLMFSDDPLNPEITHIIYDHAGDGSVPEESATMYGYLETLGKDQKGNSR EEECCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCE LLKIDTEHGGITNHGKVLDWIVAILSDVPTDHIQSDPTIEDNTVMVKIAGHQEILSKLHK EEEEECCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCCCCCEEEEEECCHHHHHHHHHH LVTSMKNQKNTQ HHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA