| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485028
Identifier: 124485028
GI number: 124485028
Start: 188068
End: 190215
Strand: Reverse
Name: 124485028
Synonym: Mlab_0201
Alternate gene names: NA
Gene position: 190215-188068 (Counterclockwise)
Preceding gene: 124485029
Following gene: 124485026
Centisome position: 10.54
GC content: 51.68
Gene sequence:
>2148_bases ATGGTAGAGCAGACAGGCGAATTCTCCGAAATTCTTACACTTTTACGAGAGAACCCGCGAGGGATGTCCGTCACAGAGAT CGCCGATGCCACGCACCTGAACCGGAACACCATAGCACGATATATGGATAACCTGCTCGTGTCCGGACGGGTCGAAATGC GCACCTTCGGAAAAGCCAAAGTCTTTTTCTTATCAAAAAGGGTCCCAGTATCCGCGATGCTCAACCTTTCCTCCGAGATG GTGCTCCTGATCGATGCCGATCTCAAAGTCATTCAGGCAAATGAGTCATTAGTATCGTTTCTCTCCGCAGAAGCCGATGA TATCGTTGGAAAATATGTGTACGACAGTGCCTGCAAAACGTTCTGCAACGATGTGCTCACCGACCAGATAAGAGCAGCCC TTCAGGGAGAGACGGTCAGGAGTGAACTGCGCCTTTTGAAGAACGGGACAGACTGTTATCTTGATCAGCGAATATATCCC ATGGTCCTTCCCGACGGACGACCCGGCGTAACGGTCGTCTGGGACGATATCACGGAAAATGTAAACTCGGCGGATGCTCT CGAACAAAGCGAAGCGATGTTTCGGCGTCTCGTTGAAACGATCCATGACGTCATCTGGTCGCTGGATGAAAATTTCTGTA TCCAGTACATAAGTCCGCAAATTACCAATGTGACCGGATACTCGCCCGAGGAACTTACCGGGCGCAAATTTTCTGAATTT ATGCCGGCAGGAGCGGCGGCCCGTTTCAACTGGGAACTTGCGTCAGCAGTATCCCGGGAAAACGGATTCATGCTTCCCGA GTTCCCCTTTATCTGCAAAGATAAACGAAAGATCTACTGCGAGTTTTCCGGATCGCCCGTTCTTCTCGAAGAAGACTCCA TCTTCCTTGGATACAACGGGGCACTTCGCGACGTGACCGACCGGAGAGATGCGGAGCTCGGGGCAAAACGGTGGAAACGG TTTTTGGACGGTGTGATGAACAATATCCCTGCGATCATCACCGTAATCGGGATGGAGTCACGGGAATACTATTACGTCAA CAAATCCGCCGAGAAGTTCCTGCAGAAGTCAAGAGCGGAACTTTCCCAGATGACTTCAAAAGAGATCCTGGCAAAAATCG GATCGATCCGTTTAACGGAAGCCCATGACACGGTGGCTTTGACCGGCAAAGAGGCACGAGTCTTTGAAGACAGGATCGTG GTCAACGGGGAGACCAGATACATCTCGGCCCAGGTCATCCCCATGAATCTCTCGGTCGACCGACAGTATCTGCTGACGAT CGTGAACGACATCACCGAAGAGGATGCAGACCGGCAGCGGCAGATGATGAGCAGGGAACTTGCCTTCATTCTGGAAGGCG TATCCTCTACCAAAGAGATGTGGGATCCGCTTCTTGATATGCTCCCGAAGATCTCCGGCTTCGAGTCGGTGGCAGTGTAT CAGTTGAGCATCTTCGATGACTATACGATGTTCAGGTCGAGAAACGGCAGATTCGCCCCTGCGATCCATACCAATTCCAT GATCCACCGGATCATCAGAAAAGGCGAACCGGTCATCTTCGACAAACACCGGATGAAACTCCTGCCGGAGAACACCGTTT CTCCGATGGATCAGGCAAAATCACTTGTACTGATGCCGGTCCTTTTCGAAGGAAGGGCAGTTGCCTGCGTGATCCTTGGA TCGAAAACGGCACTCGCGCCGGACACTGTCCGGAGAACACTTCTTTTATCCACCGCATTCCAGATCAGCACCGTTGCATC AAGATGTCTGGTCCAGGAAAAACTCCAGCGGGAACGCGACCGGACGAGAAGCTATCTCGATGTGGCCGGCGTTCTGCTTG TCGCAGTCAACCGTGACGGAAACGTCGAGATGCTCAACAAATACGGTACGAAAATTCTCGGCTACACCGAAGCGGAACTG ATGGGAAGGAACTGGTTTACGACCGTGATCCCCGAAAAGGCGAGACAGAGAAGAATCGACGGATTCCAAAAACTCATTGC AGGAAATTTCCACGAAGATGATTACGTGTATGAGGGGGTCGTCCGCTGTAAAGACGGAACGGAAAAGAACCTCAGATGGA GAAATACCCCGGTTCGCGAAGAGTGCGGGAGTATCTCCGGCATTGTTTCATCCGGAGAAGTAGTGTAG
Upstream 100 bases:
>100_bases CATATATTTAAACATATCCACCAATGCACGGCATTGATGTTGTGCATCAATGCCACACACGGTGCAAAGCATTATAATTT CCGGGGCCAAATAAAGTGTA
Downstream 100 bases:
>100_bases ATTTTCAGATCTTTTTTTCCAGAGCTTTTTCAACGATCTTTATCGCGCAAAGATCCCCGCACATCGAACAGGTTTCGCAT TCCCCGTCCCGATCATGGAT
Product: iron dependent repressor
Products: NA
Alternate protein names: Signal Transduction Histidine Kinase; PAS/PAC Sensor Hybrid Histidine Kinase; Multi-Sensor Signal Transduction Histidine Kinase; Histidine Kinase; Diguanylate Cyclase With PAS/PAC Sensor; PAS/PAC Sensor Signal Transduction Histidine Kinase; Signaling Protein; Signal Transduction Protein; Sensor Histidine Kinase; Sensory Box Sensor Histidine Kinase; Multi-Sensor Hybrid Histidine Kinase; Diguanylate Cyclase; PAS Fold Family; Multisensor Signal Transduction Histidine Kinase; PAS Sensor Protein; Signal-Transducing Histidine Kinase; Transcriptional Regulator; Two-Component Sensor Histidine Kinase; Sensory Box Histidine Kinase/Response Regulator; Ggdef Domain Protein; Iron Dependent Repressor; Sensory Transduction Histidine Kinase; Two Component System Histidine Kinase; Sensory Transduction Protein; Sensor Histidine Kinase/Response Regulator
Number of amino acids: Translated: 715; Mature: 715
Protein sequence:
>715_residues MVEQTGEFSEILTLLRENPRGMSVTEIADATHLNRNTIARYMDNLLVSGRVEMRTFGKAKVFFLSKRVPVSAMLNLSSEM VLLIDADLKVIQANESLVSFLSAEADDIVGKYVYDSACKTFCNDVLTDQIRAALQGETVRSELRLLKNGTDCYLDQRIYP MVLPDGRPGVTVVWDDITENVNSADALEQSEAMFRRLVETIHDVIWSLDENFCIQYISPQITNVTGYSPEELTGRKFSEF MPAGAAARFNWELASAVSRENGFMLPEFPFICKDKRKIYCEFSGSPVLLEEDSIFLGYNGALRDVTDRRDAELGAKRWKR FLDGVMNNIPAIITVIGMESREYYYVNKSAEKFLQKSRAELSQMTSKEILAKIGSIRLTEAHDTVALTGKEARVFEDRIV VNGETRYISAQVIPMNLSVDRQYLLTIVNDITEEDADRQRQMMSRELAFILEGVSSTKEMWDPLLDMLPKISGFESVAVY QLSIFDDYTMFRSRNGRFAPAIHTNSMIHRIIRKGEPVIFDKHRMKLLPENTVSPMDQAKSLVLMPVLFEGRAVACVILG SKTALAPDTVRRTLLLSTAFQISTVASRCLVQEKLQRERDRTRSYLDVAGVLLVAVNRDGNVEMLNKYGTKILGYTEAEL MGRNWFTTVIPEKARQRRIDGFQKLIAGNFHEDDYVYEGVVRCKDGTEKNLRWRNTPVREECGSISGIVSSGEVV
Sequences:
>Translated_715_residues MVEQTGEFSEILTLLRENPRGMSVTEIADATHLNRNTIARYMDNLLVSGRVEMRTFGKAKVFFLSKRVPVSAMLNLSSEM VLLIDADLKVIQANESLVSFLSAEADDIVGKYVYDSACKTFCNDVLTDQIRAALQGETVRSELRLLKNGTDCYLDQRIYP MVLPDGRPGVTVVWDDITENVNSADALEQSEAMFRRLVETIHDVIWSLDENFCIQYISPQITNVTGYSPEELTGRKFSEF MPAGAAARFNWELASAVSRENGFMLPEFPFICKDKRKIYCEFSGSPVLLEEDSIFLGYNGALRDVTDRRDAELGAKRWKR FLDGVMNNIPAIITVIGMESREYYYVNKSAEKFLQKSRAELSQMTSKEILAKIGSIRLTEAHDTVALTGKEARVFEDRIV VNGETRYISAQVIPMNLSVDRQYLLTIVNDITEEDADRQRQMMSRELAFILEGVSSTKEMWDPLLDMLPKISGFESVAVY QLSIFDDYTMFRSRNGRFAPAIHTNSMIHRIIRKGEPVIFDKHRMKLLPENTVSPMDQAKSLVLMPVLFEGRAVACVILG SKTALAPDTVRRTLLLSTAFQISTVASRCLVQEKLQRERDRTRSYLDVAGVLLVAVNRDGNVEMLNKYGTKILGYTEAEL MGRNWFTTVIPEKARQRRIDGFQKLIAGNFHEDDYVYEGVVRCKDGTEKNLRWRNTPVREECGSISGIVSSGEVV >Mature_715_residues MVEQTGEFSEILTLLRENPRGMSVTEIADATHLNRNTIARYMDNLLVSGRVEMRTFGKAKVFFLSKRVPVSAMLNLSSEM VLLIDADLKVIQANESLVSFLSAEADDIVGKYVYDSACKTFCNDVLTDQIRAALQGETVRSELRLLKNGTDCYLDQRIYP MVLPDGRPGVTVVWDDITENVNSADALEQSEAMFRRLVETIHDVIWSLDENFCIQYISPQITNVTGYSPEELTGRKFSEF MPAGAAARFNWELASAVSRENGFMLPEFPFICKDKRKIYCEFSGSPVLLEEDSIFLGYNGALRDVTDRRDAELGAKRWKR FLDGVMNNIPAIITVIGMESREYYYVNKSAEKFLQKSRAELSQMTSKEILAKIGSIRLTEAHDTVALTGKEARVFEDRIV VNGETRYISAQVIPMNLSVDRQYLLTIVNDITEEDADRQRQMMSRELAFILEGVSSTKEMWDPLLDMLPKISGFESVAVY QLSIFDDYTMFRSRNGRFAPAIHTNSMIHRIIRKGEPVIFDKHRMKLLPENTVSPMDQAKSLVLMPVLFEGRAVACVILG SKTALAPDTVRRTLLLSTAFQISTVASRCLVQEKLQRERDRTRSYLDVAGVLLVAVNRDGNVEMLNKYGTKILGYTEAEL MGRNWFTTVIPEKARQRRIDGFQKLIAGNFHEDDYVYEGVVRCKDGTEKNLRWRNTPVREECGSISGIVSSGEVV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80939; Mature: 80939
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: PS50112 PAS ; PS50113 PAC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVEQTGEFSEILTLLRENPRGMSVTEIADATHLNRNTIARYMDNLLVSGRVEMRTFGKAK CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCEE VFFLSKRVPVSAMLNLSSEMVLLIDADLKVIQANESLVSFLSAEADDIVGKYVYDSACKT EEEEECCCCHHHHHCCCCCEEEEEECCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHH FCNDVLTDQIRAALQGETVRSELRLLKNGTDCYLDQRIYPMVLPDGRPGVTVVWDDITEN HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEECCCEEEEECCCCCCCEEEEECCHHCC VNSADALEQSEAMFRRLVETIHDVIWSLDENFCIQYISPQITNVTGYSPEELTGRKFSEF CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCCCCHHHCCCHHHHH MPAGAAARFNWELASAVSRENGFMLPEFPFICKDKRKIYCEFSGSPVLLEEDSIFLGYNG CCCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCEEEECCC ALRDVTDRRDAELGAKRWKRFLDGVMNNIPAIITVIGMESREYYYVNKSAEKFLQKSRAE CHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECHHHHHHHHHHHHH LSQMTSKEILAKIGSIRLTEAHDTVALTGKEARVFEDRIVVNGETRYISAQVIPMNLSVD HHHHHHHHHHHHHCCEEEEECCCEEEEECCCCEEEECEEEECCCEEEEEEEEEEEECCCC RQYLLTIVNDITEEDADRQRQMMSRELAFILEGVSSTKEMWDPLLDMLPKISGFESVAVY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE QLSIFDDYTMFRSRNGRFAPAIHTNSMIHRIIRKGEPVIFDKHRMKLLPENTVSPMDQAK EEEECCCHHHHHCCCCCCCCEECHHHHHHHHHHCCCCEEEECCHHEECCCCCCCHHHHCC SLVLMPVLFEGRAVACVILGSKTALAPDTVRRTLLLSTAFQISTVASRCLVQEKLQRERD CEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTRSYLDVAGVLLVAVNRDGNVEMLNKYGTKILGYTEAELMGRNWFTTVIPEKARQRRID HHHHHHHHHEEEEEEECCCCCCHHHHHCCCEEECCCHHHHHCCCCEEHHCCHHHHHHHHH GFQKLIAGNFHEDDYVYEGVVRCKDGTEKNLRWRNTPVREECGSISGIVSSGEVV HHHHHHCCCCCCCCHHEECEEEECCCCCCCCEECCCCHHHHHCCHHCCCCCCCCC >Mature Secondary Structure MVEQTGEFSEILTLLRENPRGMSVTEIADATHLNRNTIARYMDNLLVSGRVEMRTFGKAK CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCEE VFFLSKRVPVSAMLNLSSEMVLLIDADLKVIQANESLVSFLSAEADDIVGKYVYDSACKT EEEEECCCCHHHHHCCCCCEEEEEECCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHH FCNDVLTDQIRAALQGETVRSELRLLKNGTDCYLDQRIYPMVLPDGRPGVTVVWDDITEN HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEECCCEEEEECCCCCCCEEEEECCHHCC VNSADALEQSEAMFRRLVETIHDVIWSLDENFCIQYISPQITNVTGYSPEELTGRKFSEF CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCCCCHHHCCCHHHHH MPAGAAARFNWELASAVSRENGFMLPEFPFICKDKRKIYCEFSGSPVLLEEDSIFLGYNG CCCCCCEEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCEEEECCC ALRDVTDRRDAELGAKRWKRFLDGVMNNIPAIITVIGMESREYYYVNKSAEKFLQKSRAE CHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECHHHHHHHHHHHHH LSQMTSKEILAKIGSIRLTEAHDTVALTGKEARVFEDRIVVNGETRYISAQVIPMNLSVD HHHHHHHHHHHHHCCEEEEECCCEEEEECCCCEEEECEEEECCCEEEEEEEEEEEECCCC RQYLLTIVNDITEEDADRQRQMMSRELAFILEGVSSTKEMWDPLLDMLPKISGFESVAVY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE QLSIFDDYTMFRSRNGRFAPAIHTNSMIHRIIRKGEPVIFDKHRMKLLPENTVSPMDQAK EEEECCCHHHHHCCCCCCCCEECHHHHHHHHHHCCCCEEEECCHHEECCCCCCCHHHHCC SLVLMPVLFEGRAVACVILGSKTALAPDTVRRTLLLSTAFQISTVASRCLVQEKLQRERD CEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTRSYLDVAGVLLVAVNRDGNVEMLNKYGTKILGYTEAELMGRNWFTTVIPEKARQRRID HHHHHHHHHEEEEEEECCCCCCHHHHHCCCEEECCCHHHHHCCCCEEHHCCHHHHHHHHH GFQKLIAGNFHEDDYVYEGVVRCKDGTEKNLRWRNTPVREECGSISGIVSSGEVV HHHHHHCCCCCCCCHHEECEEEECCCCCCCCEECCCCHHHHHCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA