Definition Methanocorpusculum labreanum Z chromosome, complete genome.
Accession NC_008942
Length 1,804,962

Click here to switch to the map view.

The map label for this gene is 124485025

Identifier: 124485025

GI number: 124485025

Start: 185688

End: 186122

Strand: Reverse

Name: 124485025

Synonym: Mlab_0198

Alternate gene names: NA

Gene position: 186122-185688 (Counterclockwise)

Preceding gene: 124485026

Following gene: 124485022

Centisome position: 10.31

GC content: 51.95

Gene sequence:

>435_bases
ATGGATAAGGGCATTTACTGTCTTATCCTCGCGTGTGCAGACCCCTGCAAGGTCAAAATCGGGGCACTGGGATCCGTGGA
ATTCCAGAAAGGCTGGTATCTGTATGCCGGTTCGGCGCTTGGTTCGGGCGGACTCTCCAGAGTTTCCCGGCATATTAGGT
TTTTTCATGAACGATACCGAAAACCCAAATGGCACATCGATTATCTGATGGCAGCCGATGAAATCACCCTTACAGGAGTC
GTCTGTGCAAAAACCGAAGAACGCCTCGAGTGCGTTCTCGCAAAAAACATCGGCGGATACAGCATAGCAGACTTCGGCTG
CTCGGATTGTTCCTGTGCATCACACCTGTTCTACAGAACGGATCCGCCGGAGACGGAAGTCGCCCGTGCTTTTGAGAAAA
CGGGACTTGTTCCGATCCATCATCTGATCCGGTAG

Upstream 100 bases:

>100_bases
GCAGAACTGCCGGTGGAATCTCTTTGGCCCGGACATGAGATGCCGGTCGTAACCGACGCAAAACGCCATGTCCTCCTGTC
GAAATACGATGTTGTAAGAT

Downstream 100 bases:

>100_bases
GGCGAAAGAAGACTGATTTTTAGAATGATCCGGGCGATCTCCTCCGGAGGCTCCCGTTCGGGTTTTTCTTTCTGAATCCA
GGTCAGAAACACATTGAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MDKGIYCLILACADPCKVKIGALGSVEFQKGWYLYAGSALGSGGLSRVSRHIRFFHERYRKPKWHIDYLMAADEITLTGV
VCAKTEERLECVLAKNIGGYSIADFGCSDCSCASHLFYRTDPPETEVARAFEKTGLVPIHHLIR

Sequences:

>Translated_144_residues
MDKGIYCLILACADPCKVKIGALGSVEFQKGWYLYAGSALGSGGLSRVSRHIRFFHERYRKPKWHIDYLMAADEITLTGV
VCAKTEERLECVLAKNIGGYSIADFGCSDCSCASHLFYRTDPPETEVARAFEKTGLVPIHHLIR
>Mature_144_residues
MDKGIYCLILACADPCKVKIGALGSVEFQKGWYLYAGSALGSGGLSRVSRHIRFFHERYRKPKWHIDYLMAADEITLTGV
VCAKTEERLECVLAKNIGGYSIADFGCSDCSCASHLFYRTDPPETEVARAFEKTGLVPIHHLIR

Specific function: Unknown

COG id: COG1833

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Nth/MutY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011257
- InterPro:   IPR002837
- InterPro:   IPR004036
- InterPro:   IPR003651
- InterPro:   IPR003265
- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR023170
- InterPro:   IPR000305 [H]

Pfam domain/function: PF01986 DUF123; PF00633 HHH; PF00730 HhH-GPD [H]

EC number: NA

Molecular weight: Translated: 16033; Mature: 16033

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
5.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKGIYCLILACADPCKVKIGALGSVEFQKGWYLYAGSALGSGGLSRVSRHIRFFHERYR
CCCCEEEEEEECCCCCEEEECCCCCEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHC
KPKWHIDYLMAADEITLTGVVCAKTEERLECVLAKNIGGYSIADFGCSDCSCASHLFYRT
CCCCCEEEEEECCCEEEEEEEECCCHHHHHHHHHCCCCCCEECCCCCCCCCHHHCEEECC
DPPETEVARAFEKTGLVPIHHLIR
CCCHHHHHHHHHHCCCCHHHHHCC
>Mature Secondary Structure
MDKGIYCLILACADPCKVKIGALGSVEFQKGWYLYAGSALGSGGLSRVSRHIRFFHERYR
CCCCEEEEEEECCCCCEEEECCCCCEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHC
KPKWHIDYLMAADEITLTGVVCAKTEERLECVLAKNIGGYSIADFGCSDCSCASHLFYRT
CCCCCEEEEEECCCEEEEEEEECCCHHHHHHHHHCCCCCCEECCCCCCCCCHHHCEEECC
DPPETEVARAFEKTGLVPIHHLIR
CCCHHHHHHHHHHCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]