Definition Methanocorpusculum labreanum Z chromosome, complete genome.
Accession NC_008942
Length 1,804,962

Click here to switch to the map view.

The map label for this gene is 124484984

Identifier: 124484984

GI number: 124484984

Start: 141670

End: 142587

Strand: Reverse

Name: 124484984

Synonym: Mlab_0156

Alternate gene names: NA

Gene position: 142587-141670 (Counterclockwise)

Preceding gene: 124484987

Following gene: 124484983

Centisome position: 7.9

GC content: 50.0

Gene sequence:

>918_bases
ATGACACTGGAAGAAAAGATCACATTCTATTCCCGCGAAGACGCATCCGCGTTTCAGAAGTATCTACGGGAAAAAGGATG
TCCGTCACGGATATCCGTCGAGCACAGCTTTTCGGGAACACCCTACTTTGAGGGAAGCATATCGTCAATCCTGCAGCTTA
TAGATAAAATACATGCGCGGGAGTCGGACGCCGATCTGGATGAACTCAAAGCTGACCTTCTTGGACGCAAAAAGACCCTC
GAGGAGTTTTTCCAGTCGCACAAAGCAGGCGACTGTCTGACGGATGCAACGCCGTCACAACTTCTCGCGCAGGCAGAGTC
GATCGATGCGATGGGAGAGGATGTCCAAAAACAGGCAACCGACAAGTTCATGAATGCACTGATGATCCTTGGGACCCTTG
AGGACAACGAACTTCTGGAGGTATCCGAGGAGAAAGAGTGCTACACGCTTCTTGGAACAAAGGAGGCAGGCGATCTCCGC
GTTATGTATGCATATACCGATTTTAACGGCGTAACGGAAGAGGATCTGCACGAAACGGAACTCGTCAGTCACATCAGGAC
CTCGTCGACCACGGAATTCATTATCACCGCTGGTGTTGAGATCCTGTTCGTATCCGATATCGAGGATCTGACCGAGATGC
TGGATCATATGGATGTCGAAGATGACGAGGCTGCGCGATTCGTGGATGCGGTCTTTTTCAAACAGGCTCTGATCGGTCAG
ATACACAAACTTGTTTCGGAGGGAAAACAGAGTGAAGCGGATCTGCTCGCTGCATTGGATGCCCCGGCCTTCCCGCTCGA
AGGGACTAAAGATGTGATTTCCTTTGATATATCCCCTGAGTATCTGTCAGGAGTCGTCTCCGACCTGAGAAAACAGGGTA
TTCTGTCAGGGAAAGACGGTAAGATTAAAAGCAGTTAA

Upstream 100 bases:

>100_bases
TAATGTTTGTGCTCCCTGTATAAAACATTATGCTCCATGTTAACAAGTGTCATAGTCGAGCAGAATTAATAACCATGAAG
AGAACATACCAGATATCCAG

Downstream 100 bases:

>100_bases
CGTCATATAATACTGTTAGGTGGGGGATGTGGAGTACAAAGCAGTGTGGATACTGCTGCCCTCACCAATTGATCTGAATA
CTATTTTGCAGGAATTTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MTLEEKITFYSREDASAFQKYLREKGCPSRISVEHSFSGTPYFEGSISSILQLIDKIHARESDADLDELKADLLGRKKTL
EEFFQSHKAGDCLTDATPSQLLAQAESIDAMGEDVQKQATDKFMNALMILGTLEDNELLEVSEEKECYTLLGTKEAGDLR
VMYAYTDFNGVTEEDLHETELVSHIRTSSTTEFIITAGVEILFVSDIEDLTEMLDHMDVEDDEAARFVDAVFFKQALIGQ
IHKLVSEGKQSEADLLAALDAPAFPLEGTKDVISFDISPEYLSGVVSDLRKQGILSGKDGKIKSS

Sequences:

>Translated_305_residues
MTLEEKITFYSREDASAFQKYLREKGCPSRISVEHSFSGTPYFEGSISSILQLIDKIHARESDADLDELKADLLGRKKTL
EEFFQSHKAGDCLTDATPSQLLAQAESIDAMGEDVQKQATDKFMNALMILGTLEDNELLEVSEEKECYTLLGTKEAGDLR
VMYAYTDFNGVTEEDLHETELVSHIRTSSTTEFIITAGVEILFVSDIEDLTEMLDHMDVEDDEAARFVDAVFFKQALIGQ
IHKLVSEGKQSEADLLAALDAPAFPLEGTKDVISFDISPEYLSGVVSDLRKQGILSGKDGKIKSS
>Mature_304_residues
TLEEKITFYSREDASAFQKYLREKGCPSRISVEHSFSGTPYFEGSISSILQLIDKIHARESDADLDELKADLLGRKKTLE
EFFQSHKAGDCLTDATPSQLLAQAESIDAMGEDVQKQATDKFMNALMILGTLEDNELLEVSEEKECYTLLGTKEAGDLRV
MYAYTDFNGVTEEDLHETELVSHIRTSSTTEFIITAGVEILFVSDIEDLTEMLDHMDVEDDEAARFVDAVFFKQALIGQI
HKLVSEGKQSEADLLAALDAPAFPLEGTKDVISFDISPEYLSGVVSDLRKQGILSGKDGKIKSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33832; Mature: 33701

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEEKITFYSREDASAFQKYLREKGCPSRISVEHSFSGTPYFEGSISSILQLIDKIHAR
CCCHHHHHEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
ESDADLDELKADLLGRKKTLEEFFQSHKAGDCLTDATPSQLLAQAESIDAMGEDVQKQAT
CCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DKFMNALMILGTLEDNELLEVSEEKECYTLLGTKEAGDLRVMYAYTDFNGVTEEDLHETE
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHEECCCCCCCEEEEEEEECCCCCCHHHHHHHH
LVSHIRTSSTTEFIITAGVEILFVSDIEDLTEMLDHMDVEDDEAARFVDAVFFKQALIGQ
HHHHHHCCCCCEEEEECCEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
IHKLVSEGKQSEADLLAALDAPAFPLEGTKDVISFDISPEYLSGVVSDLRKQGILSGKDG
HHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHEEECCCHHHHHHHHHHHHHCCCCCCCCC
KIKSS
CCCCC
>Mature Secondary Structure 
TLEEKITFYSREDASAFQKYLREKGCPSRISVEHSFSGTPYFEGSISSILQLIDKIHAR
CCHHHHHEECCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC
ESDADLDELKADLLGRKKTLEEFFQSHKAGDCLTDATPSQLLAQAESIDAMGEDVQKQAT
CCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DKFMNALMILGTLEDNELLEVSEEKECYTLLGTKEAGDLRVMYAYTDFNGVTEEDLHETE
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHEECCCCCCCEEEEEEEECCCCCCHHHHHHHH
LVSHIRTSSTTEFIITAGVEILFVSDIEDLTEMLDHMDVEDDEAARFVDAVFFKQALIGQ
HHHHHHCCCCCEEEEECCEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
IHKLVSEGKQSEADLLAALDAPAFPLEGTKDVISFDISPEYLSGVVSDLRKQGILSGKDG
HHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHEEECCCHHHHHHHHHHHHHCCCCCCCCC
KIKSS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA