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The map label for this gene is radC [C]

Identifier: 124484938

GI number: 124484938

Start: 101378

End: 102121

Strand: Reverse

Name: radC [C]

Synonym: Mlab_0110

Alternate gene names: 124484938

Gene position: 102121-101378 (Counterclockwise)

Preceding gene: 124484947

Following gene: 124484936

Centisome position: 5.66

GC content: 46.91

Gene sequence:

>744_bases
TTGTTGGATAATTCGGATAAAGATTTGGAAGGGGAACTTTATGCGAAACAACTATGTGTACTCTTTTCCAAAAGAGAATT
ACGCATGAGTCTGAAAAATACCGCTGATATCGATAAACCAAGAGAAAAACTGATCGCAAAGGGCCCGGGAAGTCTTGAAC
TTGAAGAACTGGTCGCAGCAATCATCGGAAGGGGAGTTCCGGGGTGTGATGCCGTCCAAATTGGAAAAAAGGTCGCAAAG
ATTCTGATGTCCAGAACCTACGAAACAGAGGTGAATGATCTCTGCGGGGTAAACGGCATGGGTGAAGCAAAAGCGTGCCA
GATCATAGCCGCTCTGGAACTCGCACGCCGGTTCCCTCCGCCAGTTCACCGGTTTGCAGTCATTCACAAAGCAGAGGATG
TCCTCCCATTCGTTCATCAGTACCGATATGATACGCAGGAAAACGTCATTTCAGTAACATTGTCCGGCGCACATGAAGTG
CTGAAGGTCAGACTCATCACCAAAGGTCTCGTAAATGAATCACAGATCCACCCAAGAGAAGTGTTTGCCGGAGCAATTTT
GGACCGGGCGGCAGCGATGATTCTGATTCATAACCATCCGTCCGGAAATCTGCATCCAAGCAAACAGGATCTGAAAATAA
CAAAAGAGATGCAGGCTGCCGGAGAACTGCTCGGAATAAAACTGCTGGATCATCTGATCATCGGACCCACAGATGGATTT
TACAGCATTGTAGACGAAGAATAA

Upstream 100 bases:

>100_bases
CATCAGCTGCTGCTTCTGCGTAGGATTTATACTTACGGTTTGCCTGGGATTCTCCAGAAAATGCTCCATCAATACAGTCC
TGAGTGTTCATACACATATA

Downstream 100 bases:

>100_bases
AAAAAATTAGCGTTTTGCTTTCGCGCATCCGCCGCATACACGGCAAACCTCGATGCACGGAGTGAACTGTGTTCCCTTTC
CGCAAAACGGCGGAATGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MLDNSDKDLEGELYAKQLCVLFSKRELRMSLKNTADIDKPREKLIAKGPGSLELEELVAAIIGRGVPGCDAVQIGKKVAK
ILMSRTYETEVNDLCGVNGMGEAKACQIIAALELARRFPPPVHRFAVIHKAEDVLPFVHQYRYDTQENVISVTLSGAHEV
LKVRLITKGLVNESQIHPREVFAGAILDRAAAMILIHNHPSGNLHPSKQDLKITKEMQAAGELLGIKLLDHLIIGPTDGF
YSIVDEE

Sequences:

>Translated_247_residues
MLDNSDKDLEGELYAKQLCVLFSKRELRMSLKNTADIDKPREKLIAKGPGSLELEELVAAIIGRGVPGCDAVQIGKKVAK
ILMSRTYETEVNDLCGVNGMGEAKACQIIAALELARRFPPPVHRFAVIHKAEDVLPFVHQYRYDTQENVISVTLSGAHEV
LKVRLITKGLVNESQIHPREVFAGAILDRAAAMILIHNHPSGNLHPSKQDLKITKEMQAAGELLGIKLLDHLIIGPTDGF
YSIVDEE
>Mature_247_residues
MLDNSDKDLEGELYAKQLCVLFSKRELRMSLKNTADIDKPREKLIAKGPGSLELEELVAAIIGRGVPGCDAVQIGKKVAK
ILMSRTYETEVNDLCGVNGMGEAKACQIIAALELARRFPPPVHRFAVIHKAEDVLPFVHQYRYDTQENVISVTLSGAHEV
LKVRLITKGLVNESQIHPREVFAGAILDRAAAMILIHNHPSGNLHPSKQDLKITKEMQAAGELLGIKLLDHLIIGPTDGF
YSIVDEE

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=209, Percent_Identity=32.0574162679426, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788312, Length=87, Percent_Identity=39.0804597701149, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788997, Length=90, Percent_Identity=36.6666666666667, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI2367100, Length=79, Percent_Identity=43.0379746835443, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 27219; Mature: 27219

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDNSDKDLEGELYAKQLCVLFSKRELRMSLKNTADIDKPREKLIAKGPGSLELEELVAA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHH
IIGRGVPGCDAVQIGKKVAKILMSRTYETEVNDLCGVNGMGEAKACQIIAALELARRFPP
HHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
PVHRFAVIHKAEDVLPFVHQYRYDTQENVISVTLSGAHEVLKVRLITKGLVNESQIHPRE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCHHH
VFAGAILDRAAAMILIHNHPSGNLHPSKQDLKITKEMQAAGELLGIKLLDHLIIGPTDGF
HHHHHHHHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YSIVDEE
EECCCCC
>Mature Secondary Structure
MLDNSDKDLEGELYAKQLCVLFSKRELRMSLKNTADIDKPREKLIAKGPGSLELEELVAA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHH
IIGRGVPGCDAVQIGKKVAKILMSRTYETEVNDLCGVNGMGEAKACQIIAALELARRFPP
HHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
PVHRFAVIHKAEDVLPFVHQYRYDTQENVISVTLSGAHEVLKVRLITKGLVNESQIHPRE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCHHH
VFAGAILDRAAAMILIHNHPSGNLHPSKQDLKITKEMQAAGELLGIKLLDHLIIGPTDGF
HHHHHHHHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
YSIVDEE
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA