| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is paaK [H]
Identifier: 124266179
GI number: 124266179
Start: 1048299
End: 1049606
Strand: Direct
Name: paaK [H]
Synonym: Mpe_A0986
Alternate gene names: 124266179
Gene position: 1048299-1049606 (Clockwise)
Preceding gene: 124266178
Following gene: 124266180
Centisome position: 25.92
GC content: 69.11
Gene sequence:
>1308_bases ATGCCCGTGAAACGCCCCGCCCCCGGCGACCTCGAGGCGATCGAGACCGCCAGCCGCGACGAGATCTCGGCGCTGCAGCT GCAGCGCCTGCGTGCGACCCTGCGCCACGCCTACGACCGGGTGCCGCACTACCGGCGCGCGTTCGACGCCCAGGGCGTGC ACCCCGACGACCTGAAGCAGCTCGCCGACCTCTCCAGGTTTCCGTTCACCGCCAAGAAGGATCTGCGCGACAACTACCCG TTCGGCATGTTCGCGGTGCCGCGCGAGCAGGTGGCCCGCCTCCATGCGTCGTCCGGCACCACCGGCAAGCCGACGGTGGT GGGCTACACGCTGAAGGACATCGACACCTGGGCCGAGCTGGTGGCACGCTCGATCCGCGCCTCCGGCGGGCGCCCGGGCG ATCTCGTCCACGTGTCCTACGGCTACGGGCTGTTCACCGGCGGCCTCGGTGCGCACTACGGCGCCGAGCGGGTCGGCTGC ACCGTCATCCCGATGTCGGGCGGACAGACCGAGAAGCAGGTGCAGCTGCTGTGCGACTTCCGGCCCGACATCATCATGGT CACGCCCAGCTACATGCAGGTGATCATCGAGGAGTTCGTGCGCCAGGGCCTGGACCCGCGCGAGAGCTCGCTGAAGGTCG GCATCTTCGGCGCCGAACCCTGGACCGAGGCGATGCGCCAGGAGATCGAGGGCCGGGCCGGCCTGGACGCGGTCGACATC TACGGCCTGTCCGAGGTCATGGGCCCGGGCGTCGCCAACGAGTGCATCGAATCCAAGGACGGGCCGGTGATCTGGGAAGA CCATTTCTACCCGGAGATCATCGACCCCGAGACCGGCGAGGTGCTGCCCGATGGCGCCGAGGGCGAACTGGTCTTCACCT CGCTGACCAAGGAGGCGCTGCCCATCGTCCGCTACCGCACGCGCGACCTGACGCGGTTGCTGCCGCCGACAGCGCGTTCG TTCCGCCGCATGAGCAAGATCGTCGGACGCAGCGACGACATGCTGATCATCCGCGGCGTCAACCTGTTCCCGACGCAGAT CGAGGAGCTGGTGCTGCAGGAAGGCCCGCTGTCGGGGCAGTACCAGCTGGTGGTCACGCGCGAGGGCCTGCTCGACGAGG TGGAGGTGCGCTGCGAGGTGCAGCCGGCGCATGCGGGGGTCGACCGCGTTGCCCTCGGTGCGCGGCTGCAGCAGCGCATC AAGACGCTGATCGGCGTGAACACGACGGTCAGCGTCGGCCTGCCCGATTCGATCGAACGCACGCTGGTCGGCAAGGCCCG CCGCGTGATCGACAGGCGACCCAAGTAA
Upstream 100 bases:
>100_bases ACCAGCGCGGCGAATGCCTCGCGGTGTTCCGCGGCCGCTCCTACGCGATGCGCGGGAAGCCCGCGGTGGCGTCCGCCGGC CGCTGAACGAGGAGACCGTC
Downstream 100 bases:
>100_bases GGAACCCGCACCATGTACACGCAAGCCATGGACAGCGCGCCGAAGGACGAGCGCCCGGCGGTCCGCTCGGTCGAGGAGGC GCGGCTCCAGCAGCGCTTCG
Product: phenylacetate-CoA ligase
Products: NA
Alternate protein names: Phenylacetyl-CoA ligase; PA-CoA ligase [H]
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MPVKRPAPGDLEAIETASRDEISALQLQRLRATLRHAYDRVPHYRRAFDAQGVHPDDLKQLADLSRFPFTAKKDLRDNYP FGMFAVPREQVARLHASSGTTGKPTVVGYTLKDIDTWAELVARSIRASGGRPGDLVHVSYGYGLFTGGLGAHYGAERVGC TVIPMSGGQTEKQVQLLCDFRPDIIMVTPSYMQVIIEEFVRQGLDPRESSLKVGIFGAEPWTEAMRQEIEGRAGLDAVDI YGLSEVMGPGVANECIESKDGPVIWEDHFYPEIIDPETGEVLPDGAEGELVFTSLTKEALPIVRYRTRDLTRLLPPTARS FRRMSKIVGRSDDMLIIRGVNLFPTQIEELVLQEGPLSGQYQLVVTREGLLDEVEVRCEVQPAHAGVDRVALGARLQQRI KTLIGVNTTVSVGLPDSIERTLVGKARRVIDRRPK
Sequences:
>Translated_435_residues MPVKRPAPGDLEAIETASRDEISALQLQRLRATLRHAYDRVPHYRRAFDAQGVHPDDLKQLADLSRFPFTAKKDLRDNYP FGMFAVPREQVARLHASSGTTGKPTVVGYTLKDIDTWAELVARSIRASGGRPGDLVHVSYGYGLFTGGLGAHYGAERVGC TVIPMSGGQTEKQVQLLCDFRPDIIMVTPSYMQVIIEEFVRQGLDPRESSLKVGIFGAEPWTEAMRQEIEGRAGLDAVDI YGLSEVMGPGVANECIESKDGPVIWEDHFYPEIIDPETGEVLPDGAEGELVFTSLTKEALPIVRYRTRDLTRLLPPTARS FRRMSKIVGRSDDMLIIRGVNLFPTQIEELVLQEGPLSGQYQLVVTREGLLDEVEVRCEVQPAHAGVDRVALGARLQQRI KTLIGVNTTVSVGLPDSIERTLVGKARRVIDRRPK >Mature_434_residues PVKRPAPGDLEAIETASRDEISALQLQRLRATLRHAYDRVPHYRRAFDAQGVHPDDLKQLADLSRFPFTAKKDLRDNYPF GMFAVPREQVARLHASSGTTGKPTVVGYTLKDIDTWAELVARSIRASGGRPGDLVHVSYGYGLFTGGLGAHYGAERVGCT VIPMSGGQTEKQVQLLCDFRPDIIMVTPSYMQVIIEEFVRQGLDPRESSLKVGIFGAEPWTEAMRQEIEGRAGLDAVDIY GLSEVMGPGVANECIESKDGPVIWEDHFYPEIIDPETGEVLPDGAEGELVFTSLTKEALPIVRYRTRDLTRLLPPTARSF RRMSKIVGRSDDMLIIRGVNLFPTQIEELVLQEGPLSGQYQLVVTREGLLDEVEVRCEVQPAHAGVDRVALGARLQQRIK TLIGVNTTVSVGLPDSIERTLVGKARRVIDRRPK
Specific function: Catalyzes the activation of phenylacetic acid to phenylacetyl-CoA [H]
COG id: COG1541
COG function: function code H; Coenzyme F390 synthetase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787664, Length=427, Percent_Identity=64.4028103044497, Blast_Score=558, Evalue=1e-160,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000873 - InterPro: IPR011880 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.30 [H]
Molecular weight: Translated: 48194; Mature: 48063
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVKRPAPGDLEAIETASRDEISALQLQRLRATLRHAYDRVPHYRRAFDAQGVHPDDLKQ CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHH LADLSRFPFTAKKDLRDNYPFGMFAVPREQVARLHASSGTTGKPTVVGYTLKDIDTWAEL HHHHHHCCCCCHHHHCCCCCCCEEECCHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHH VARSIRASGGRPGDLVHVSYGYGLFTGGLGAHYGAERVGCTVIPMSGGQTEKQVQLLCDF HHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCCCCHHCCEEEEECCCCCCHHHHHHHCCC RPDIIMVTPSYMQVIIEEFVRQGLDPRESSLKVGIFGAEPWTEAMRQEIEGRAGLDAVDI CCCEEEECHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHH YGLSEVMGPGVANECIESKDGPVIWEDHFYPEIIDPETGEVLPDGAEGELVFTSLTKEAL CCHHHHHCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHH PIVRYRTRDLTRLLPPTARSFRRMSKIVGRSDDMLIIRGVNLFPTQIEELVLQEGPLSGQ HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC YQLVVTREGLLDEVEVRCEVQPAHAGVDRVALGARLQQRIKTLIGVNTTVSVGLPDSIER EEEEEECCCCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH TLVGKARRVIDRRPK HHHHHHHHHHCCCCC >Mature Secondary Structure PVKRPAPGDLEAIETASRDEISALQLQRLRATLRHAYDRVPHYRRAFDAQGVHPDDLKQ CCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHH LADLSRFPFTAKKDLRDNYPFGMFAVPREQVARLHASSGTTGKPTVVGYTLKDIDTWAEL HHHHHHCCCCCHHHHCCCCCCCEEECCHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHH VARSIRASGGRPGDLVHVSYGYGLFTGGLGAHYGAERVGCTVIPMSGGQTEKQVQLLCDF HHHHHHHCCCCCCCEEEEEECCCHHCCCCCCCCCCHHCCEEEEECCCCCCHHHHHHHCCC RPDIIMVTPSYMQVIIEEFVRQGLDPRESSLKVGIFGAEPWTEAMRQEIEGRAGLDAVDI CCCEEEECHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHH YGLSEVMGPGVANECIESKDGPVIWEDHFYPEIIDPETGEVLPDGAEGELVFTSLTKEAL CCHHHHHCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHH PIVRYRTRDLTRLLPPTARSFRRMSKIVGRSDDMLIIRGVNLFPTQIEELVLQEGPLSGQ HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC YQLVVTREGLLDEVEVRCEVQPAHAGVDRVALGARLQQRIKTLIGVNTTVSVGLPDSIER EEEEEECCCCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHH TLVGKARRVIDRRPK HHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9748275; 9278503; 10766858 [H]