| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is 124266160
Identifier: 124266160
GI number: 124266160
Start: 1028241
End: 1030682
Strand: Direct
Name: 124266160
Synonym: Mpe_A0967
Alternate gene names: NA
Gene position: 1028241-1030682 (Clockwise)
Preceding gene: 124266159
Following gene: 124266161
Centisome position: 25.43
GC content: 68.59
Gene sequence:
>2442_bases ATGCACGCAGACTCCAGCCTCGACCCGCATCCCGTGATCGCGCGCGTCGAAGACTTCGATCGCCGCTCGGGCAACTTGCT CGAGCGCGCCTTCTTCAACTTCCGACCGCTCGTCGTCATCGCCTGCCTGCTGGTCACGCTGCTGCTCGGCTGGCAGGCCG GCAAGCTGCAGCTCAATGCCAGCTTCGAGAAGATGATCCCGACCACGCACCCGTACGTGATCAACTTCCTCGAGTACCGC GGCAAGCTCAGCGGCCTGGGCAACTCGGTGCGCATCGCGGTCGAGACGACCTCGGGCGACATCTACGACAAGACCTACCT CGAGACCCTCGCACGCATCAACGACGAGGTGTTCCTGCTGCCCGGCGTGGATCGCGCCTACATGAAGTCGCTGTGGACGC CGGCGGTGCGCTGGACGGCGGTGACCGAGGAGGGCCTGGAGGGCGGCACGGTGATCTCCGAGGACTACGACGGATCGCCG CAGGCGCTGCAGAAGGTGCGCTCCAACATCGAGCGCTCGGGGCAGATCGGGCAGCTCGTCGCGAACGACTTCAAGTCCAG CATCATCTACGTGCCGCTGCTCAGCCGCATCGAGGCCACCGGCCAGGCGCTCGACTACGCCGAGTTCGCGCGCCAGGTGG AGGCGCTGCGCGCGAAGCACGAGTCGGCCACGATCCGCATCCACATCACCGGCTTCGCCAAGATCATCGGCGACCTGATC GACGGGCTGGCGGAGGTGCTGAAGTACTTCGCGGTGGCGATCGTGATCGCTGCGGCCATGGTCTGCGCGTACAGCCGCGA CCTGCGCAGCACGCTGCTGGTGGTGTCGGTCTCGCTGGTGGCGGTGGTGTGGCAACTCGGGCTGCTGCCCACGCTGGGCT TCCGGCTCGACCCGTTCTCGATGCTGGTGCCGTTCCTGGTGTTCGCGATCGGCATGAGCCATGGCGCGCAGAAGATGAAC GGCATCATGCAGGACATCGGCCGCGGCACGCACAAGCTGGTGGCGGCCCGCTACACCTTCCGCCGCCTCTTCCTCGCCGG GCTGACCGCGTTGCTGGCCGATGCGGTGGGCTTCGCGGTGCTGCTGGTGATCGACATCCTGGTGATCAAGGAGCTCGCGC TCGCGGCGAGCCTGGGCGTGGGCGTGCTGATCTTCACCAACCTGATCCTGCTGCCGGTGCTGCTGTCCTACACCGGCGTG AGCCGCCGGGCGGCCGAGCGCAGCCTGCGCACCGAGCTGGCCGACAGCGCCGGCGGCGAGCGGCACCGCGTCTGGCACAC GCTGGTGCGCTTCACGGAGCGCAAGTGGGCGCTGGGCGCGATCGCGGTGTCGGCCGGTCTGGCGGCGCTCGGCTTCGCGG CCAGCCTGCACCTGCAGATCGGCGACCTGGACCCCGGCGCGCCGGAGCTGCGCCCCGAGTCGCGCTACAACCGCGACAGC GCCTTCATGGTCGCCAACTACGCCGCCAGCGCCGACATCCTGGTGGTGATGGTCAAGACCGCCGACAAGGGCTGCGTGAG CTACCCGGTGGTGTCGCGCATCGACGAGCTGGCCTGGGCCCTGGAGCAGCTGCCCGGCGTCGACTCCACCAGCTCGGCCC CCGCGCTCGCCAAGCTGTCCTCGGTGGGCTACAACGAGGGCAACCTCAAGTGGTACGAGCTGGTGCCGAACGAAGCCGCG CTCGGCACCCTGCTCACCTACGCGCCGCGCGAGCTGTTGCCGGCGAGCTGCGACCTGCTGCCGCTCTACGTCTACCTGAA GGACCACAAGGCGGCCACGCTCAGCCGCGTGGTCGAGACCGTGGAGGCCTTCAAGGCTCAGCACGACTCCGACGAGGCGC GCTTCCTGCTGGCCGCCGGCAGCGCCGGCATCGAGGCGGCGACCAACATCGTCGTGCAGCGCGCCTGGTACGAGATGCTG GCGCTGGTCTACGGTGCCGTGGTGGTGCTGTGCTTCGTGACCTTCCGATCCTGGCGGGCCGTGGTGGTGGCGGTGCTGCC GCTGATGCTGACCTCGCTGCTGGCCGAGGCGCTGATGGTCATGCTGGGCATCGGCGTCAAGGTCGCGACGCTGCCGGTCA TCGCGCTCGGCGTGGGCATCGGCGTGGACTACGCGCTGTACATCCTGTCGGTGATGCTGGCCCGGCTGCGTGCGGGCCAC ACGCTGGCCCAGGCCTATTACGGGGCACTGCTGTTCACCGGCAAGGTGGTGATGCTGACCGGCCTGACGCTGGCCCTGGG TGTGGCGACCTGGGCGTTCTCGGACATCAAGTTCCAGGCCGACATGGGCATCCTGCTCGCCTTCATGTTCCTCTGGAACA TGCTGGGCGCACTGATCCTGCTGCCGGCGCTGGCCTGCTTCATGTTGAAGCCCACGGTGGTGCGCAGCGACCGGGCCGCC GACCCGGCGGTGCCCGAGGAACGCCACAAGCTGGCCGCCTGA
Upstream 100 bases:
>100_bases CCTCGCACTGGCCGGGCTGCGGGGTCCGCAGCGCGTGGACCTGGCTGCCCCGCCCGCCGCCCGCTGACGCCGCGGCGCTG TTCCTTCATCGACACCATCC
Downstream 100 bases:
>100_bases GAGCCTGAAGCCCGTCCGCTCGCCGCGCCGGGCAGCGCGACGATGTGGATGGTAGCGGTGTCATCTCCACTACACTCGTG AGATGACAGCGCCCGACGCC
Product: putative transporter
Products: NA
Alternate protein names: RND Superfamily Exporter; Patched Family Protein; Exporter Of RND Superfamily Protein; Transporter Protein; Exporter Of RND Superfamily; RND Family Multidrug Efflux Transporter; RND Superfamily Transporter; Exporter; Exporters Of RND Superfamily; RND Family Transporter; RND Family Efflux Transporter
Number of amino acids: Translated: 813; Mature: 813
Protein sequence:
>813_residues MHADSSLDPHPVIARVEDFDRRSGNLLERAFFNFRPLVVIACLLVTLLLGWQAGKLQLNASFEKMIPTTHPYVINFLEYR GKLSGLGNSVRIAVETTSGDIYDKTYLETLARINDEVFLLPGVDRAYMKSLWTPAVRWTAVTEEGLEGGTVISEDYDGSP QALQKVRSNIERSGQIGQLVANDFKSSIIYVPLLSRIEATGQALDYAEFARQVEALRAKHESATIRIHITGFAKIIGDLI DGLAEVLKYFAVAIVIAAAMVCAYSRDLRSTLLVVSVSLVAVVWQLGLLPTLGFRLDPFSMLVPFLVFAIGMSHGAQKMN GIMQDIGRGTHKLVAARYTFRRLFLAGLTALLADAVGFAVLLVIDILVIKELALAASLGVGVLIFTNLILLPVLLSYTGV SRRAAERSLRTELADSAGGERHRVWHTLVRFTERKWALGAIAVSAGLAALGFAASLHLQIGDLDPGAPELRPESRYNRDS AFMVANYAASADILVVMVKTADKGCVSYPVVSRIDELAWALEQLPGVDSTSSAPALAKLSSVGYNEGNLKWYELVPNEAA LGTLLTYAPRELLPASCDLLPLYVYLKDHKAATLSRVVETVEAFKAQHDSDEARFLLAAGSAGIEAATNIVVQRAWYEML ALVYGAVVVLCFVTFRSWRAVVVAVLPLMLTSLLAEALMVMLGIGVKVATLPVIALGVGIGVDYALYILSVMLARLRAGH TLAQAYYGALLFTGKVVMLTGLTLALGVATWAFSDIKFQADMGILLAFMFLWNMLGALILLPALACFMLKPTVVRSDRAA DPAVPEERHKLAA
Sequences:
>Translated_813_residues MHADSSLDPHPVIARVEDFDRRSGNLLERAFFNFRPLVVIACLLVTLLLGWQAGKLQLNASFEKMIPTTHPYVINFLEYR GKLSGLGNSVRIAVETTSGDIYDKTYLETLARINDEVFLLPGVDRAYMKSLWTPAVRWTAVTEEGLEGGTVISEDYDGSP QALQKVRSNIERSGQIGQLVANDFKSSIIYVPLLSRIEATGQALDYAEFARQVEALRAKHESATIRIHITGFAKIIGDLI DGLAEVLKYFAVAIVIAAAMVCAYSRDLRSTLLVVSVSLVAVVWQLGLLPTLGFRLDPFSMLVPFLVFAIGMSHGAQKMN GIMQDIGRGTHKLVAARYTFRRLFLAGLTALLADAVGFAVLLVIDILVIKELALAASLGVGVLIFTNLILLPVLLSYTGV SRRAAERSLRTELADSAGGERHRVWHTLVRFTERKWALGAIAVSAGLAALGFAASLHLQIGDLDPGAPELRPESRYNRDS AFMVANYAASADILVVMVKTADKGCVSYPVVSRIDELAWALEQLPGVDSTSSAPALAKLSSVGYNEGNLKWYELVPNEAA LGTLLTYAPRELLPASCDLLPLYVYLKDHKAATLSRVVETVEAFKAQHDSDEARFLLAAGSAGIEAATNIVVQRAWYEML ALVYGAVVVLCFVTFRSWRAVVVAVLPLMLTSLLAEALMVMLGIGVKVATLPVIALGVGIGVDYALYILSVMLARLRAGH TLAQAYYGALLFTGKVVMLTGLTLALGVATWAFSDIKFQADMGILLAFMFLWNMLGALILLPALACFMLKPTVVRSDRAA DPAVPEERHKLAA >Mature_813_residues MHADSSLDPHPVIARVEDFDRRSGNLLERAFFNFRPLVVIACLLVTLLLGWQAGKLQLNASFEKMIPTTHPYVINFLEYR GKLSGLGNSVRIAVETTSGDIYDKTYLETLARINDEVFLLPGVDRAYMKSLWTPAVRWTAVTEEGLEGGTVISEDYDGSP QALQKVRSNIERSGQIGQLVANDFKSSIIYVPLLSRIEATGQALDYAEFARQVEALRAKHESATIRIHITGFAKIIGDLI DGLAEVLKYFAVAIVIAAAMVCAYSRDLRSTLLVVSVSLVAVVWQLGLLPTLGFRLDPFSMLVPFLVFAIGMSHGAQKMN GIMQDIGRGTHKLVAARYTFRRLFLAGLTALLADAVGFAVLLVIDILVIKELALAASLGVGVLIFTNLILLPVLLSYTGV SRRAAERSLRTELADSAGGERHRVWHTLVRFTERKWALGAIAVSAGLAALGFAASLHLQIGDLDPGAPELRPESRYNRDS AFMVANYAASADILVVMVKTADKGCVSYPVVSRIDELAWALEQLPGVDSTSSAPALAKLSSVGYNEGNLKWYELVPNEAA LGTLLTYAPRELLPASCDLLPLYVYLKDHKAATLSRVVETVEAFKAQHDSDEARFLLAAGSAGIEAATNIVVQRAWYEML ALVYGAVVVLCFVTFRSWRAVVVAVLPLMLTSLLAEALMVMLGIGVKVATLPVIALGVGIGVDYALYILSVMLARLRAGH TLAQAYYGALLFTGKVVMLTGLTLALGVATWAFSDIKFQADMGILLAFMFLWNMLGALILLPALACFMLKPTVVRSDRAA DPAVPEERHKLAA
Specific function: Unknown
COG id: COG1033
COG function: function code R; Predicted exporters of the RND superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88227; Mature: 88227
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHADSSLDPHPVIARVEDFDRRSGNLLERAFFNFRPLVVIACLLVTLLLGWQAGKLQLNA CCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC SFEKMIPTTHPYVINFLEYRGKLSGLGNSVRIAVETTSGDIYDKTYLETLARINDEVFLL CHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEE PGVDRAYMKSLWTPAVRWTAVTEEGLEGGTVISEDYDGSPQALQKVRSNIERSGQIGQLV CCCCHHHHHHHCCCHHEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCHHHHH ANDFKSSIIYVPLLSRIEATGQALDYAEFARQVEALRAKHESATIRIHITGFAKIIGDLI HHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH DGLAEVLKYFAVAIVIAAAMVCAYSRDLRSTLLVVSVSLVAVVWQLGLLPTLGFRLDPFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH MLVPFLVFAIGMSHGAQKMNGIMQDIGRGTHKLVAARYTFRRLFLAGLTALLADAVGFAV HHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVIDILVIKELALAASLGVGVLIFTNLILLPVLLSYTGVSRRAAERSLRTELADSAGGE HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC RHRVWHTLVRFTERKWALGAIAVSAGLAALGFAASLHLQIGDLDPGAPELRPESRYNRDS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCC AFMVANYAASADILVVMVKTADKGCVSYPVVSRIDELAWALEQLPGVDSTSSAPALAKLS EEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH SVGYNEGNLKWYELVPNEAALGTLLTYAPRELLPASCDLLPLYVYLKDHKAATLSRVVET HCCCCCCCEEEEEECCCCHHHHHHHHHCCHHHCCCCCCCEEEEEEEECCHHHHHHHHHHH VEAFKAQHDSDEARFLLAAGSAGIEAATNIVVQRAWYEMLALVYGAVVVLCFVTFRSWRA HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVVAVLPLMLTSLLAEALMVMLGIGVKVATLPVIALGVGIGVDYALYILSVMLARLRAGH HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH TLAQAYYGALLFTGKVVMLTGLTLALGVATWAFSDIKFQADMGILLAFMFLWNMLGALIL HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHH LPALACFMLKPTVVRSDRAADPAVPEERHKLAA HHHHHHHHHCCHHCCCCCCCCCCCCHHHHCCCC >Mature Secondary Structure MHADSSLDPHPVIARVEDFDRRSGNLLERAFFNFRPLVVIACLLVTLLLGWQAGKLQLNA CCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEECC SFEKMIPTTHPYVINFLEYRGKLSGLGNSVRIAVETTSGDIYDKTYLETLARINDEVFLL CHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCEEEE PGVDRAYMKSLWTPAVRWTAVTEEGLEGGTVISEDYDGSPQALQKVRSNIERSGQIGQLV CCCCHHHHHHHCCCHHEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCHHHHH ANDFKSSIIYVPLLSRIEATGQALDYAEFARQVEALRAKHESATIRIHITGFAKIIGDLI HHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH DGLAEVLKYFAVAIVIAAAMVCAYSRDLRSTLLVVSVSLVAVVWQLGLLPTLGFRLDPFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH MLVPFLVFAIGMSHGAQKMNGIMQDIGRGTHKLVAARYTFRRLFLAGLTALLADAVGFAV HHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVIDILVIKELALAASLGVGVLIFTNLILLPVLLSYTGVSRRAAERSLRTELADSAGGE HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC RHRVWHTLVRFTERKWALGAIAVSAGLAALGFAASLHLQIGDLDPGAPELRPESRYNRDS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCC AFMVANYAASADILVVMVKTADKGCVSYPVVSRIDELAWALEQLPGVDSTSSAPALAKLS EEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH SVGYNEGNLKWYELVPNEAALGTLLTYAPRELLPASCDLLPLYVYLKDHKAATLSRVVET HCCCCCCCEEEEEECCCCHHHHHHHHHCCHHHCCCCCCCEEEEEEEECCHHHHHHHHHHH VEAFKAQHDSDEARFLLAAGSAGIEAATNIVVQRAWYEMLALVYGAVVVLCFVTFRSWRA HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVVAVLPLMLTSLLAEALMVMLGIGVKVATLPVIALGVGIGVDYALYILSVMLARLRAGH HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH TLAQAYYGALLFTGKVVMLTGLTLALGVATWAFSDIKFQADMGILLAFMFLWNMLGALIL HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHHHH LPALACFMLKPTVVRSDRAADPAVPEERHKLAA HHHHHHHHHCCHHCCCCCCCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA