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The map label for this gene is stc [H]

Identifier: 124266149

GI number: 124266149

Start: 1013538

End: 1015574

Strand: Direct

Name: stc [H]

Synonym: Mpe_A0956

Alternate gene names: 124266149

Gene position: 1013538-1015574 (Clockwise)

Preceding gene: 124266148

Following gene: 124266150

Centisome position: 25.06

GC content: 70.0

Gene sequence:

>2037_bases
ATGGTCAACAGCCATTTCCCCAAGCCCGTGACGACGCCGCCGTTGTCGATCGGGCCACAAGGCGAGTTCGAGCCGCAAGG
TGTTCGGGAGACCACACAGGCCTGGGAGCAGTTCGTCTCCGGGCAGTCGCTCGTGCAGTCGGCCGTGCCCAAGCACGTGC
TGTCGTCGTGGCAGCGCAGCCGCCGCTTCGGCGTCGAACCCGGCTCGCGCAAGGCCCCGCTCGCGATCCGGGGCGACGAC
GAGCTCGAGCAGCTCCGGCTGCGCAACCGCGATCTGGTCTGGGCCGCGCAGGGCATCTTCATGTCGTCGGCACACCTGCT
CGCGAAGTCGGGCTCGATCATGCTGCTGACCGATGCCACCGGCATCGTGCTCGAATCATCGGGCGATGCGCGCACGCTGG
ACGCGGCGCAGGATATCCACCTGACCCACGGCGGCAACTGGAACGAGAGCGTGGTCGGTACCAACGGCATCGGCACCGCG
CTGGCCACCGGCCGGCCGATCCAGGTGCATGCCGCGCAGCATTTCTGCGAAGGCATCAAGAGCTGGACCTGCGCGGCCGC
CCCGGTCTACCTGTCCGGCACCGATCAGCTGCTCGGCGTGATCGATATCTCGGGCCCGCCCGCGACCTTCCAGCTCAACA
ACCTCGCGCTCGCCGTGGCGTGCGCCCGGCAGATCGAGTCGGTGCTGGCCGAGCGCACCAGCCGCGAGCACAACGTGCTG
CTGGAGGCCTGCCTCAACCACCCGGGGCGGGCCGGCGCCGCCGCCATGGTGGTGATCGACCGCAACGCGCGCATCGTGCA
CAGCAGCGGCTGCCTCACGCCGGATCTCGCGGTGCGGCTGGCGGACGGTCTCAAGGGGCGCCAGATCTCCGCCTGGAACA
ACCGGCTGCCGGACGGGCTGCTGGGCGAATGGATGAACCCGGTGCGCCTCGACGGCAGCGCGATCGGCGCGCTGCTGATC
GTGCCCAAGCGCTCGATCGGCCGGATCCTGCAGCGCCCGGAAGGCGATCTGCCCCAGCTTCCGGCACCGGCCGCGCCGAC
CCTCGCCGCCGCCCCGGCACCGGAGTGCCTGCCGGGCGTGGTGGGCGCCAGCAGTGTCTTTCGCGGCGCGATCGAACGCA
CCAAGCTGCTCGGGCGTCGCCGGGTCTCGGTGCTGATCCAGGGCGAAACCGGAGCGGGCAAGGAGTTGTTCGCCCGCGCA
CTGCACGAGGAGGAGCGCAAGGGCGGCAGCTTCGTGGCCTTCAACTGCGGCGCGACGACCAAGGAGCTGATCGGCAGCGA
GCTCTTCGGGCACGTGCGCGGCGCCTTCACCGGGGCCACCAGCGAAGGACGAGCCGGGCGCTTCGAACTCGCCCACGGCG
GCACCTTGTGCCTCGACGAGGTGGGCGAGCTGCCGCTGGACCTGCAGCCGGTGCTGCTGCGCGCGCTCGAGGAGGGCGTG
GTCTACCGGCTCGGCGACACCACGCCGCGGCCGGTCGACGTGCGGCTGGTGGCGATGACCAACCGTGATCTGCTGCAGGA
GGTCGAGGCAGGGCGCTTCCGTCGCGATCTCTTCCATCGCATCGGCGTCACGCGGATCCAGGTGCCGGCCCTGCGGGAAC
GCGATGGCGACGTCGACCTGCTCGTCGACCACTTCGTGCGGACGCTGTCGGTGCGCCATGGCGTCGCGAGCCGGGAGATC
GGCCCGGACGTTCGGCAGCTGTTGCGGGCCTATGCCTGGCCCGGCAATGTGCGTGAACTGCGCAACGTGATCGAGTCGCT
CCTGCTCACCTCCGATGACGAGGTGGTGCGGCGGGAGGAGTTGCCGGCAGAACTGCTGGCGACGCTCGACGGCGCCAAGG
CTCCGGCGCTCGACGCCGATCTCACGAGCCTGGAGGCCACTGAACGCCTGACCATCCTGCAGGCGATCCAGCGCGTGCAC
GGCAACCTGGCGTTGGCTGCACGGGTGCTCGGCATCTCGCGCAGCACGCTGTACCGGAAGGTCGAGCGCTACCAGCTCGA
CGATGTCGTGAAGGCGAGCAACGATGGCGAAAACTGA

Upstream 100 bases:

>100_bases
CCCGATGGCAATGCAGGGGCGCGTGACGCCCAATCCCGGAACAAGCAAGGCGCGCTGAGGCACCACGCCCGGACGAGCCC
GCAGGTCGGAGGAGACAGCC

Downstream 100 bases:

>100_bases
AGCGCGAGCAGTACGCGACGTTTCGCCGCGCACCGATCCACCGCAGCACGGAGCCCCGACCGGCTCCGGGGCGGTGAAAG
CCGGTGCGGGCCGGGCACGT

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 678; Mature: 678

Protein sequence:

>678_residues
MVNSHFPKPVTTPPLSIGPQGEFEPQGVRETTQAWEQFVSGQSLVQSAVPKHVLSSWQRSRRFGVEPGSRKAPLAIRGDD
ELEQLRLRNRDLVWAAQGIFMSSAHLLAKSGSIMLLTDATGIVLESSGDARTLDAAQDIHLTHGGNWNESVVGTNGIGTA
LATGRPIQVHAAQHFCEGIKSWTCAAAPVYLSGTDQLLGVIDISGPPATFQLNNLALAVACARQIESVLAERTSREHNVL
LEACLNHPGRAGAAAMVVIDRNARIVHSSGCLTPDLAVRLADGLKGRQISAWNNRLPDGLLGEWMNPVRLDGSAIGALLI
VPKRSIGRILQRPEGDLPQLPAPAAPTLAAAPAPECLPGVVGASSVFRGAIERTKLLGRRRVSVLIQGETGAGKELFARA
LHEEERKGGSFVAFNCGATTKELIGSELFGHVRGAFTGATSEGRAGRFELAHGGTLCLDEVGELPLDLQPVLLRALEEGV
VYRLGDTTPRPVDVRLVAMTNRDLLQEVEAGRFRRDLFHRIGVTRIQVPALRERDGDVDLLVDHFVRTLSVRHGVASREI
GPDVRQLLRAYAWPGNVRELRNVIESLLLTSDDEVVRREELPAELLATLDGAKAPALDADLTSLEATERLTILQAIQRVH
GNLALAARVLGISRSTLYRKVERYQLDDVVKASNDGEN

Sequences:

>Translated_678_residues
MVNSHFPKPVTTPPLSIGPQGEFEPQGVRETTQAWEQFVSGQSLVQSAVPKHVLSSWQRSRRFGVEPGSRKAPLAIRGDD
ELEQLRLRNRDLVWAAQGIFMSSAHLLAKSGSIMLLTDATGIVLESSGDARTLDAAQDIHLTHGGNWNESVVGTNGIGTA
LATGRPIQVHAAQHFCEGIKSWTCAAAPVYLSGTDQLLGVIDISGPPATFQLNNLALAVACARQIESVLAERTSREHNVL
LEACLNHPGRAGAAAMVVIDRNARIVHSSGCLTPDLAVRLADGLKGRQISAWNNRLPDGLLGEWMNPVRLDGSAIGALLI
VPKRSIGRILQRPEGDLPQLPAPAAPTLAAAPAPECLPGVVGASSVFRGAIERTKLLGRRRVSVLIQGETGAGKELFARA
LHEEERKGGSFVAFNCGATTKELIGSELFGHVRGAFTGATSEGRAGRFELAHGGTLCLDEVGELPLDLQPVLLRALEEGV
VYRLGDTTPRPVDVRLVAMTNRDLLQEVEAGRFRRDLFHRIGVTRIQVPALRERDGDVDLLVDHFVRTLSVRHGVASREI
GPDVRQLLRAYAWPGNVRELRNVIESLLLTSDDEVVRREELPAELLATLDGAKAPALDADLTSLEATERLTILQAIQRVH
GNLALAARVLGISRSTLYRKVERYQLDDVVKASNDGEN
>Mature_678_residues
MVNSHFPKPVTTPPLSIGPQGEFEPQGVRETTQAWEQFVSGQSLVQSAVPKHVLSSWQRSRRFGVEPGSRKAPLAIRGDD
ELEQLRLRNRDLVWAAQGIFMSSAHLLAKSGSIMLLTDATGIVLESSGDARTLDAAQDIHLTHGGNWNESVVGTNGIGTA
LATGRPIQVHAAQHFCEGIKSWTCAAAPVYLSGTDQLLGVIDISGPPATFQLNNLALAVACARQIESVLAERTSREHNVL
LEACLNHPGRAGAAAMVVIDRNARIVHSSGCLTPDLAVRLADGLKGRQISAWNNRLPDGLLGEWMNPVRLDGSAIGALLI
VPKRSIGRILQRPEGDLPQLPAPAAPTLAAAPAPECLPGVVGASSVFRGAIERTKLLGRRRVSVLIQGETGAGKELFARA
LHEEERKGGSFVAFNCGATTKELIGSELFGHVRGAFTGATSEGRAGRFELAHGGTLCLDEVGELPLDLQPVLLRALEEGV
VYRLGDTTPRPVDVRLVAMTNRDLLQEVEAGRFRRDLFHRIGVTRIQVPALRERDGDVDLLVDHFVRTLSVRHGVASREI
GPDVRQLLRAYAWPGNVRELRNVIESLLLTSDDEVVRREELPAELLATLDGAKAPALDADLTSLEATERLTILQAIQRVH
GNLALAARVLGISRSTLYRKVERYQLDDVVKASNDGEN

Specific function: Unknown

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=332, Percent_Identity=39.4578313253012, Blast_Score=226, Evalue=4e-60,
Organism=Escherichia coli, GI1786524, Length=300, Percent_Identity=43.3333333333333, Blast_Score=220, Evalue=2e-58,
Organism=Escherichia coli, GI1790437, Length=306, Percent_Identity=42.483660130719, Blast_Score=220, Evalue=3e-58,
Organism=Escherichia coli, GI1790299, Length=363, Percent_Identity=37.7410468319559, Blast_Score=218, Evalue=7e-58,
Organism=Escherichia coli, GI87082152, Length=297, Percent_Identity=45.4545454545455, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI1788550, Length=293, Percent_Identity=41.9795221843003, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI1788905, Length=310, Percent_Identity=39.0322580645161, Blast_Score=209, Evalue=4e-55,
Organism=Escherichia coli, GI87082117, Length=316, Percent_Identity=40.8227848101266, Blast_Score=208, Evalue=7e-55,
Organism=Escherichia coli, GI1789087, Length=313, Percent_Identity=40.5750798722045, Blast_Score=192, Evalue=4e-50,
Organism=Escherichia coli, GI87081872, Length=325, Percent_Identity=36.3076923076923, Blast_Score=176, Evalue=6e-45,
Organism=Escherichia coli, GI1787583, Length=312, Percent_Identity=32.6923076923077, Blast_Score=170, Evalue=3e-43,
Organism=Escherichia coli, GI87081858, Length=293, Percent_Identity=36.1774744027304, Blast_Score=166, Evalue=5e-42,
Organism=Escherichia coli, GI1789828, Length=286, Percent_Identity=35.6643356643357, Blast_Score=134, Evalue=2e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 73197; Mature: 73197

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNSHFPKPVTTPPLSIGPQGEFEPQGVRETTQAWEQFVSGQSLVQSAVPKHVLSSWQRS
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
RRFGVEPGSRKAPLAIRGDDELEQLRLRNRDLVWAAQGIFMSSAHLLAKSGSIMLLTDAT
HCCCCCCCCCCCCEEECCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC
GIVLESSGDARTLDAAQDIHLTHGGNWNESVVGTNGIGTALATGRPIQVHAAQHFCEGIK
CEEEECCCCCCEECCHHCEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEHHHHHHHHHHH
SWTCAAAPVYLSGTDQLLGVIDISGPPATFQLNNLALAVACARQIESVLAERTSREHNVL
CCCCCCCCEEECCCCCEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHH
LEACLNHPGRAGAAAMVVIDRNARIVHSSGCLTPDLAVRLADGLKGRQISAWNNRLPDGL
HHHHHCCCCCCCCEEEEEEECCCEEEECCCCCCHHHHHHHHCCCCCCEECHHCCCCCCHH
LGEWMNPVRLDGSAIGALLIVPKRSIGRILQRPEGDLPQLPAPAAPTLAAAPAPECLPGV
HHHCCCCEEECCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
VGASSVFRGAIERTKLLGRRRVSVLIQGETGAGKELFARALHEEERKGGSFVAFNCGATT
HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCH
KELIGSELFGHVRGAFTGATSEGRAGRFELAHGGTLCLDEVGELPLDLQPVLLRALEEGV
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEHHHHCCCCCCHHHHHHHHHHCCC
VYRLGDTTPRPVDVRLVAMTNRDLLQEVEAGRFRRDLFHRIGVTRIQVPALRERDGDVDL
EEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHCCCCCHHH
LVDHFVRTLSVRHGVASREIGPDVRQLLRAYAWPGNVRELRNVIESLLLTSDDEVVRREE
HHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
LPAELLATLDGAKAPALDADLTSLEATERLTILQAIQRVHGNLALAARVLGISRSTLYRK
CCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHH
VERYQLDDVVKASNDGEN
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MVNSHFPKPVTTPPLSIGPQGEFEPQGVRETTQAWEQFVSGQSLVQSAVPKHVLSSWQRS
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
RRFGVEPGSRKAPLAIRGDDELEQLRLRNRDLVWAAQGIFMSSAHLLAKSGSIMLLTDAT
HCCCCCCCCCCCCEEECCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCC
GIVLESSGDARTLDAAQDIHLTHGGNWNESVVGTNGIGTALATGRPIQVHAAQHFCEGIK
CEEEECCCCCCEECCHHCEEEECCCCCCCCCCCCCCCCHHHCCCCCEEEHHHHHHHHHHH
SWTCAAAPVYLSGTDQLLGVIDISGPPATFQLNNLALAVACARQIESVLAERTSREHNVL
CCCCCCCCEEECCCCCEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHH
LEACLNHPGRAGAAAMVVIDRNARIVHSSGCLTPDLAVRLADGLKGRQISAWNNRLPDGL
HHHHHCCCCCCCCEEEEEEECCCEEEECCCCCCHHHHHHHHCCCCCCEECHHCCCCCCHH
LGEWMNPVRLDGSAIGALLIVPKRSIGRILQRPEGDLPQLPAPAAPTLAAAPAPECLPGV
HHHCCCCEEECCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
VGASSVFRGAIERTKLLGRRRVSVLIQGETGAGKELFARALHEEERKGGSFVAFNCGATT
HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCH
KELIGSELFGHVRGAFTGATSEGRAGRFELAHGGTLCLDEVGELPLDLQPVLLRALEEGV
HHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEHHHHCCCCCCHHHHHHHHHHCCC
VYRLGDTTPRPVDVRLVAMTNRDLLQEVEAGRFRRDLFHRIGVTRIQVPALRERDGDVDL
EEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHCCCCCHHH
LVDHFVRTLSVRHGVASREIGPDVRQLLRAYAWPGNVRELRNVIESLLLTSDDEVVRREE
HHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
LPAELLATLDGAKAPALDADLTSLEATERLTILQAIQRVHGNLALAARVLGISRSTLYRK
CCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHH
VERYQLDDVVKASNDGEN
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA