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The map label for this gene is yhjC [H]

Identifier: 124266064

GI number: 124266064

Start: 909995

End: 910936

Strand: Direct

Name: yhjC [H]

Synonym: Mpe_A0871

Alternate gene names: 124266064

Gene position: 909995-910936 (Clockwise)

Preceding gene: 124266059

Following gene: 124266065

Centisome position: 22.5

GC content: 69.43

Gene sequence:

>942_bases
ATGGACAAGTTCTCTGCGATGCAGGCCTTCGTGCGCGTGGTCGAGGCCGGCAACTTCACGAAGGCGGCCGACTCGCTGCA
GCTGCCCAAGCCCACGGTGACGAGGCTGGTGCAGATGCTCGAGGCGCAGCTGCAGACCAAGCTGCTGAACCGCACGACGC
GGCGCGTCACGGTCACACCCGACGGCGCGGCCTACTACGACCGCGCGATCCGGCTGCTGGGCGACATCGACGAACTCGAG
TCGAGCATGTCGCACGCGAAGACCAGCCCGCGCGGGCGGCTGCGCATCGACGTCGGCTCGTCGGTCGGCACGCTGGTGCT
GATCCCGGCGCTGCCGCAGTTCCATGCGCTCTATCCCGACATCCAGATCGACCTCGGCGTCAGCGACCGCCCGGTCGACC
TGCTGAGCGAGAACGTCGACTGCGTGCTGCGCGGTGGCGAGCTGATCGACCAGTCGTTGGTGGCGCGTCGCGTCGGCGAA
CTGCAGTTCCTGGCCGCCGCGTCGCCCGATTACCTGAAGCGCCACGGCATGCCGCGCCATCCGCGCGAGCTCGAGTCGGG
CGCGCACGCGGTGATCGGCTTCTTCTCGGCGCGCACCGGCCGGCAGTACCCGTTCGACTTCCACAAGGACGGCGAACGCA
TCGAGGTGGCCGGCCGCTACGTGCTGTCGGTCAACGACTCCAACGCCTACGTGGCGGCCGGCCTAGCCGGACTCGGCGTC
GTGCAGGCCGCGACCTTCATGCTGCAGACCCACATCAGCCGCGGCGAGCTCGAGCCCGTGCTGGCCGACTGGTGCTCGGA
GCCGGTGCCGATCCACGTGGTCTACCCACCCAACCGCCACCTCAGCGCCAAGCTGCGTGTGTTCGTCGACTGGGTCGCGG
AGCTGTTCGCGCGCGACGACCTGATGCAGCGCAGGAGCAGCCTGCCGCGCGTGCGTCGGTAG

Upstream 100 bases:

>100_bases
TGAAACAATAAATAGCCGCATTGCTCATGCTTTGTTTCACCAACGCAATAATCCGGCCGCCGCATCGGTGCGGCATCACC
AGCGCGGGGAGGCGGCGCCC

Downstream 100 bases:

>100_bases
CACTGCAGACTGCGGCGCGTGCCACATGCTGGCACGCGGAGGTCGACATGGCTGAGCAGATGACGCACAGCGCACGCTGA
CGCTGCAGCGCAGACGCGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDKFSAMQAFVRVVEAGNFTKAADSLQLPKPTVTRLVQMLEAQLQTKLLNRTTRRVTVTPDGAAYYDRAIRLLGDIDELE
SSMSHAKTSPRGRLRIDVGSSVGTLVLIPALPQFHALYPDIQIDLGVSDRPVDLLSENVDCVLRGGELIDQSLVARRVGE
LQFLAAASPDYLKRHGMPRHPRELESGAHAVIGFFSARTGRQYPFDFHKDGERIEVAGRYVLSVNDSNAYVAAGLAGLGV
VQAATFMLQTHISRGELEPVLADWCSEPVPIHVVYPPNRHLSAKLRVFVDWVAELFARDDLMQRRSSLPRVRR

Sequences:

>Translated_313_residues
MDKFSAMQAFVRVVEAGNFTKAADSLQLPKPTVTRLVQMLEAQLQTKLLNRTTRRVTVTPDGAAYYDRAIRLLGDIDELE
SSMSHAKTSPRGRLRIDVGSSVGTLVLIPALPQFHALYPDIQIDLGVSDRPVDLLSENVDCVLRGGELIDQSLVARRVGE
LQFLAAASPDYLKRHGMPRHPRELESGAHAVIGFFSARTGRQYPFDFHKDGERIEVAGRYVLSVNDSNAYVAAGLAGLGV
VQAATFMLQTHISRGELEPVLADWCSEPVPIHVVYPPNRHLSAKLRVFVDWVAELFARDDLMQRRSSLPRVRR
>Mature_313_residues
MDKFSAMQAFVRVVEAGNFTKAADSLQLPKPTVTRLVQMLEAQLQTKLLNRTTRRVTVTPDGAAYYDRAIRLLGDIDELE
SSMSHAKTSPRGRLRIDVGSSVGTLVLIPALPQFHALYPDIQIDLGVSDRPVDLLSENVDCVLRGGELIDQSLVARRVGE
LQFLAAASPDYLKRHGMPRHPRELESGAHAVIGFFSARTGRQYPFDFHKDGERIEVAGRYVLSVNDSNAYVAAGLAGLGV
VQAATFMLQTHISRGELEPVLADWCSEPVPIHVVYPPNRHLSAKLRVFVDWVAELFARDDLMQRRSSLPRVRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=40.2027027027027, Blast_Score=215, Evalue=3e-57,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=34.4947735191638, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=30.8724832214765, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=29.553264604811, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=31.0810810810811, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=27.5261324041812, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=26.8965517241379, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI145693105, Length=121, Percent_Identity=30.5785123966942, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789173, Length=294, Percent_Identity=24.1496598639456, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34792; Mature: 34792

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFSAMQAFVRVVEAGNFTKAADSLQLPKPTVTRLVQMLEAQLQTKLLNRTTRRVTVTP
CCHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
DGAAYYDRAIRLLGDIDELESSMSHAKTSPRGRLRIDVGSSVGTLVLIPALPQFHALYPD
CCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCHHHHHCCC
IQIDLGVSDRPVDLLSENVDCVLRGGELIDQSLVARRVGELQFLAAASPDYLKRHGMPRH
EEEECCCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCC
PRELESGAHAVIGFFSARTGRQYPFDFHKDGERIEVAGRYVLSVNDSNAYVAAGLAGLGV
CHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEHHHHHHHH
VQAATFMLQTHISRGELEPVLADWCSEPVPIHVVYPPNRHLSAKLRVFVDWVAELFARDD
HHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
LMQRRSSLPRVRR
HHHHHHCCCCCCC
>Mature Secondary Structure
MDKFSAMQAFVRVVEAGNFTKAADSLQLPKPTVTRLVQMLEAQLQTKLLNRTTRRVTVTP
CCHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
DGAAYYDRAIRLLGDIDELESSMSHAKTSPRGRLRIDVGSSVGTLVLIPALPQFHALYPD
CCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCHHHHHCCC
IQIDLGVSDRPVDLLSENVDCVLRGGELIDQSLVARRVGELQFLAAASPDYLKRHGMPRH
EEEECCCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCC
PRELESGAHAVIGFFSARTGRQYPFDFHKDGERIEVAGRYVLSVNDSNAYVAAGLAGLGV
CHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCEEEHHHHHHHH
VQAATFMLQTHISRGELEPVLADWCSEPVPIHVVYPPNRHLSAKLRVFVDWVAELFARDD
HHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
LMQRRSSLPRVRR
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]