Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is yufP [H]

Identifier: 124265961

GI number: 124265961

Start: 800744

End: 801841

Strand: Reverse

Name: yufP [H]

Synonym: Mpe_A0768

Alternate gene names: 124265961

Gene position: 801841-800744 (Counterclockwise)

Preceding gene: 124265962

Following gene: 124265960

Centisome position: 19.83

GC content: 72.95

Gene sequence:

>1098_bases
ATGCGCAGCACCGCCCTCGCCGACATCCTGCTGCCGATCGGCGCGCTGGCCGCCGCGCTGCTGCTGTTCGGCGTGTTCGT
GTGGTTCGGTGGCACCGACCCGGTCGAGGTCTGGGTGCTGCTGTTCAAGGGCGCCTTCGGCGACTGGTTCTCGTGGCAGA
ACACGCTGCAGCGCGCCGCGCCGCTGATGCTCACTGCGCTGTGCGTCGCGCTGCCGGCGCGTGCCGGCCTGGTGATCATC
GGCGGCGAAGGTGCGCTGGTGCTCGGCGGCCTGGCCGCAGCGGCGCTGCCTTACGCGGTGCCGCTGCCGGGCAACGTGAT
CGGCACCGTGCTGGTCTGCGCGGCCGGCATGGCGGCCGGCGCCGCGTGGATCGCGCTGGCCGGTGCGCTGCGGCAGTACC
GCGGCGTCAACGAGACCATCAGCAGCCTGCTGCTCGCCTACATCGCGATCGCACTGTTCAAGCAGATCGTCGAGGGCCCG
CTGCGTGACCCGGCCACGCTGAACAAGCCGTCCACGCGCGCGCTGGACGAAGGCATCCGCATCGGCGGCATGTTCGGCTC
CGACGTGCACTGGGGCCTGGTGCTGGGCCTGCTGGCCTGCGCGGTGCTGGGCCTGTGGCTCGCGCTCACCGCGCGCGGCT
TCGCGGTGCGCGTGGTCGGCGGCAACCCGCGCACCGCGCAGTTGGTGGGCCTGCCGGCCAGCGGGCTGATCCTGATCGCC
TGCGCGATCGGCGGCGCCTGCGCCGGGCTGGCCGGCGCGATCGAGGTGGCCGCGGTGCACACCAATGCCAACGCTTCCAT
CATCGCCGGCTACGGCTACGCGGGCATCCTGGTGAGCTTCATCGCACGGCACAACCCGATCGCCGTGATCCCGGTCGCCA
TCCTGTTCGGTGGCTTCGGCGCGGCCGGCAGCCTGCTGCAGCGCCGGCTCGATCTGCCCGACGCCTCGGTGCAGGTGCTG
CAGGGCATCGCCTTCGTGCTGATCCTCGCCAGCGAGGCGCTGCGCGGCATCGACTGGCGCGCCGCCGCGGTGAAGCTCAG
GCCCCCGGCCGGGCCGGCGGCGCCGGTGCAGTTGAAGGTCGAGGGCGGGGGAACGTGA

Upstream 100 bases:

>100_bases
CGCAGTCGGCGCAGCGCGCCGACCGCACCCCATCACCGCCCCGGCGCCCACCGCCTGCCGCGCCAGCGCGCACCACTGAC
CGCCACAGGAGTCGACCGCC

Downstream 100 bases:

>100_bases
TGATGACCATGACGAGGAAGCAGCGGGCGATCGAGCACACGGGAGCCACGTCATGAGCGACACCCTGATCGCCTTCTCCG
CCGCCATCCTCGGCGGCGCC

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MRSTALADILLPIGALAAALLLFGVFVWFGGTDPVEVWVLLFKGAFGDWFSWQNTLQRAAPLMLTALCVALPARAGLVII
GGEGALVLGGLAAAALPYAVPLPGNVIGTVLVCAAGMAAGAAWIALAGALRQYRGVNETISSLLLAYIAIALFKQIVEGP
LRDPATLNKPSTRALDEGIRIGGMFGSDVHWGLVLGLLACAVLGLWLALTARGFAVRVVGGNPRTAQLVGLPASGLILIA
CAIGGACAGLAGAIEVAAVHTNANASIIAGYGYAGILVSFIARHNPIAVIPVAILFGGFGAAGSLLQRRLDLPDASVQVL
QGIAFVLILASEALRGIDWRAAAVKLRPPAGPAAPVQLKVEGGGT

Sequences:

>Translated_365_residues
MRSTALADILLPIGALAAALLLFGVFVWFGGTDPVEVWVLLFKGAFGDWFSWQNTLQRAAPLMLTALCVALPARAGLVII
GGEGALVLGGLAAAALPYAVPLPGNVIGTVLVCAAGMAAGAAWIALAGALRQYRGVNETISSLLLAYIAIALFKQIVEGP
LRDPATLNKPSTRALDEGIRIGGMFGSDVHWGLVLGLLACAVLGLWLALTARGFAVRVVGGNPRTAQLVGLPASGLILIA
CAIGGACAGLAGAIEVAAVHTNANASIIAGYGYAGILVSFIARHNPIAVIPVAILFGGFGAAGSLLQRRLDLPDASVQVL
QGIAFVLILASEALRGIDWRAAAVKLRPPAGPAAPVQLKVEGGGT
>Mature_365_residues
MRSTALADILLPIGALAAALLLFGVFVWFGGTDPVEVWVLLFKGAFGDWFSWQNTLQRAAPLMLTALCVALPARAGLVII
GGEGALVLGGLAAAALPYAVPLPGNVIGTVLVCAAGMAAGAAWIALAGALRQYRGVNETISSLLLAYIAIALFKQIVEGP
LRDPATLNKPSTRALDEGIRIGGMFGSDVHWGLVLGLLACAVLGLWLALTARGFAVRVVGGNPRTAQLVGLPASGLILIA
CAIGGACAGLAGAIEVAAVHTNANASIIAGYGYAGILVSFIARHNPIAVIPVAILFGGFGAAGSLLQRRLDLPDASVQVL
QGIAFVLILASEALRGIDWRAAAVKLRPPAGPAAPVQLKVEGGGT

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4603

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851
- InterPro:   IPR002229 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37062; Mature: 37062

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSTALADILLPIGALAAALLLFGVFVWFGGTDPVEVWVLLFKGAFGDWFSWQNTLQRAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
PLMLTALCVALPARAGLVIIGGEGALVLGGLAAAALPYAVPLPGNVIGTVLVCAAGMAAG
HHHHHHHHHHHHCCCCEEEECCCCCEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
AAWIALAGALRQYRGVNETISSLLLAYIAIALFKQIVEGPLRDPATLNKPSTRALDEGIR
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCE
IGGMFGSDVHWGLVLGLLACAVLGLWLALTARGFAVRVVGGNPRTAQLVGLPASGLILIA
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCHHHHH
CAIGGACAGLAGAIEVAAVHTNANASIIAGYGYAGILVSFIARHNPIAVIPVAILFGGFG
HHHHHHHHHHHHHHEEEEEEECCCCEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHCCCC
AAGSLLQRRLDLPDASVQVLQGIAFVLILASEALRGIDWRAAAVKLRPPAGPAAPVQLKV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEE
EGGGT
CCCCC
>Mature Secondary Structure
MRSTALADILLPIGALAAALLLFGVFVWFGGTDPVEVWVLLFKGAFGDWFSWQNTLQRAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
PLMLTALCVALPARAGLVIIGGEGALVLGGLAAAALPYAVPLPGNVIGTVLVCAAGMAAG
HHHHHHHHHHHHCCCCEEEECCCCCEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
AAWIALAGALRQYRGVNETISSLLLAYIAIALFKQIVEGPLRDPATLNKPSTRALDEGIR
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCE
IGGMFGSDVHWGLVLGLLACAVLGLWLALTARGFAVRVVGGNPRTAQLVGLPASGLILIA
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCHHHHH
CAIGGACAGLAGAIEVAAVHTNANASIIAGYGYAGILVSFIARHNPIAVIPVAILFGGFG
HHHHHHHHHHHHHHEEEEEEECCCCEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHCCCC
AAGSLLQRRLDLPDASVQVLQGIAFVLILASEALRGIDWRAAAVKLRPPAGPAAPVQLKV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEE
EGGGT
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]