| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is ureC
Identifier: 124265860
GI number: 124265860
Start: 703369
End: 705096
Strand: Reverse
Name: ureC
Synonym: Mpe_A0667
Alternate gene names: 124265860
Gene position: 705096-703369 (Counterclockwise)
Preceding gene: 124265861
Following gene: 124265858
Centisome position: 17.43
GC content: 69.68
Gene sequence:
>1728_bases ATGGCCACCATCGGACGCCGCGCCTACGCGGAGATGTACGGACCGACGGTGGGCGACCGCGTGCGGCTGGCCGACACCGA ACTCGTTATCGAGGTCGAGGCCGACTACACGTTGCGCGCCGGCGGCTACGGAGAAGAAGTGAAGTTCGGTGGCGGCAAGG TCATCCGCGACGGCATGGGCCAGAGCCAGCGGCCCAACGGCCCCGGGCCGCACGACGCGGTGGACTGCGTGGTGACCAAT GCGCTGATCCTCGACCACTGGGGCATCGTGAAGGCCGACATCGGCCTGCGCGGCCAGCGCATCGCCGCGATCGGCAAGGC CGGCAACCCGGACGTGCAGCCGGGCATCGACATCGTCATCGGCCCGGGCACCGAGGTGATCGCAGGCGAGGGCCTGATCG TGACCGCCGGCGGCATCGACTGCCACATCCACTTCATCTGCCCGCAGCAGATCGAGGAGGCGCTCTCCAGCGGCGTGACC ACCATGCTCGGCGGCGGCACCGGGCCGGCCACCGGCACCTTCGCGACCACCTGCACGCCGGGGCCGGAGAACATCGCCAA CATGCTGCGGGCGGCCGACGCCTTCCCGATGAACCTGGGCTTCTTCGGCAAGGGCAACGCGAGCCGCCCCGAGGCACTGC GCCAGCAGGTCGAGGCCGGTGTGATCGGCCTCAAGCTGCACGAGGACTGGGGCACGACGCCGGCCGCGATCGACTGCTGC CTGTCGGTGGCCGACGAGGGCGACGTGCAGGTGGCGATCCACAGCGACACGCTGAACGAGTCGGGCTTCGTCGAGGACAC CATCGGCGCGACCAAGGGCCGCACGCTGTGCGCCTTCCACACCGAGGGCGCCGGCGGCGGCCACGCGCCCGACATCCTGC GCGTGGTGGGCGAAGCGAACTTCCTGCCGTCCTCCACCAACCCGACGATGCCCTACACCGTCAACACGCTCGACGAGCAT GTCGACATGCTGATGGTCTGCCACCACCTCGACGCGGCGATCGCCGAGGACCTGGCCTTCGCCGAGAGCCGCATCCGCCG CGAGACCATCGCGGCCGAGGACATCCTGCACGACCTGGGCGCGATCAGCATGTTCAGCTCGGACTCGCAGGCCATGGGTC GCGTCGGCGAGGTGGTGCTGCGCTGCTGGCAGACCGCGCACAAGATGAAGGTCCAGCGCGGCAAGCTGCCGGGCGACCCG GAGCGCCACGACAACGGCCGCGCCAAACGCTACGTGGCCAAGTACACGATCAACCCGGCCATCGCACACGGCGTCAGCCA CGAGGTCGGCAGCATCGAGGTCGGCAAGTGGGCCGACCTGGTGTTCTGGCGGCCGGCCTTCTTCGGCGTGAAGCCTTCGC TGGTGATGAAGGGCGGCTTCATCGCGTCGGCGCTGATGGGCGATGCCAACGCCAGCATCCCGACGCCGCAGCCGGTGCAC TACCGGCCGATGTTCGGTGCCTTCGGTGGCGCGCTCACGCGCGGTTCGCTCAGCTTCGTGAGCCAGGCCGCGCTGGCCTC GGAGGTGGGCAGCGTGTACGGCCTGCGCAAGCCGCTCTCGGCGGTGAAGCAGTGCCGCACCGTCAAGAAGGGCGACATGG TGCACAACGCCTACCTGCCGCGCATGGAGGTCGACGCCCAGACCTACCAGGTGCGCGCCGACGGCCAGCTGCTGACCTGC GAGCCGGCCACCGCCCTGCCGATGACGCAGCGCTATTTCCTCTTCTGA
Upstream 100 bases:
>100_bases CGCTTCGAGCCCGGCCAGCAGCGCACTGTCGAGCTGGTCGACTACGCCGGCGACCGCACGGTCTACGGCTTCCGCGGCCT CGTGCAAGGAAAGCTCTGAC
Downstream 100 bases:
>100_bases TCCGCGGGCCCCGGCGGGGCCCCGGGCGGCAGACCCTCCTGTGTGGCGCGCGCCATCAGGGCCCGGCAGTCGCGGTCCTC GCCGGGGCCGGTCTCGATCA
Product: urease subunit alpha
Products: NA
Alternate protein names: Urea amidohydrolase subunit alpha
Number of amino acids: Translated: 575; Mature: 574
Protein sequence:
>575_residues MATIGRRAYAEMYGPTVGDRVRLADTELVIEVEADYTLRAGGYGEEVKFGGGKVIRDGMGQSQRPNGPGPHDAVDCVVTN ALILDHWGIVKADIGLRGQRIAAIGKAGNPDVQPGIDIVIGPGTEVIAGEGLIVTAGGIDCHIHFICPQQIEEALSSGVT TMLGGGTGPATGTFATTCTPGPENIANMLRAADAFPMNLGFFGKGNASRPEALRQQVEAGVIGLKLHEDWGTTPAAIDCC LSVADEGDVQVAIHSDTLNESGFVEDTIGATKGRTLCAFHTEGAGGGHAPDILRVVGEANFLPSSTNPTMPYTVNTLDEH VDMLMVCHHLDAAIAEDLAFAESRIRRETIAAEDILHDLGAISMFSSDSQAMGRVGEVVLRCWQTAHKMKVQRGKLPGDP ERHDNGRAKRYVAKYTINPAIAHGVSHEVGSIEVGKWADLVFWRPAFFGVKPSLVMKGGFIASALMGDANASIPTPQPVH YRPMFGAFGGALTRGSLSFVSQAALASEVGSVYGLRKPLSAVKQCRTVKKGDMVHNAYLPRMEVDAQTYQVRADGQLLTC EPATALPMTQRYFLF
Sequences:
>Translated_575_residues MATIGRRAYAEMYGPTVGDRVRLADTELVIEVEADYTLRAGGYGEEVKFGGGKVIRDGMGQSQRPNGPGPHDAVDCVVTN ALILDHWGIVKADIGLRGQRIAAIGKAGNPDVQPGIDIVIGPGTEVIAGEGLIVTAGGIDCHIHFICPQQIEEALSSGVT TMLGGGTGPATGTFATTCTPGPENIANMLRAADAFPMNLGFFGKGNASRPEALRQQVEAGVIGLKLHEDWGTTPAAIDCC LSVADEGDVQVAIHSDTLNESGFVEDTIGATKGRTLCAFHTEGAGGGHAPDILRVVGEANFLPSSTNPTMPYTVNTLDEH VDMLMVCHHLDAAIAEDLAFAESRIRRETIAAEDILHDLGAISMFSSDSQAMGRVGEVVLRCWQTAHKMKVQRGKLPGDP ERHDNGRAKRYVAKYTINPAIAHGVSHEVGSIEVGKWADLVFWRPAFFGVKPSLVMKGGFIASALMGDANASIPTPQPVH YRPMFGAFGGALTRGSLSFVSQAALASEVGSVYGLRKPLSAVKQCRTVKKGDMVHNAYLPRMEVDAQTYQVRADGQLLTC EPATALPMTQRYFLF >Mature_574_residues ATIGRRAYAEMYGPTVGDRVRLADTELVIEVEADYTLRAGGYGEEVKFGGGKVIRDGMGQSQRPNGPGPHDAVDCVVTNA LILDHWGIVKADIGLRGQRIAAIGKAGNPDVQPGIDIVIGPGTEVIAGEGLIVTAGGIDCHIHFICPQQIEEALSSGVTT MLGGGTGPATGTFATTCTPGPENIANMLRAADAFPMNLGFFGKGNASRPEALRQQVEAGVIGLKLHEDWGTTPAAIDCCL SVADEGDVQVAIHSDTLNESGFVEDTIGATKGRTLCAFHTEGAGGGHAPDILRVVGEANFLPSSTNPTMPYTVNTLDEHV DMLMVCHHLDAAIAEDLAFAESRIRRETIAAEDILHDLGAISMFSSDSQAMGRVGEVVLRCWQTAHKMKVQRGKLPGDPE RHDNGRAKRYVAKYTINPAIAHGVSHEVGSIEVGKWADLVFWRPAFFGVKPSLVMKGGFIASALMGDANASIPTPQPVHY RPMFGAFGGALTRGSLSFVSQAALASEVGSVYGLRKPLSAVKQCRTVKKGDMVHNAYLPRMEVDAQTYQVRADGQLLTCE PATALPMTQRYFLF
Specific function: Unknown
COG id: COG0804
COG function: function code E; Urea amidohydrolase (urease) alpha subunit
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 urease domain
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): URE1_METPP (A2SDJ0)
Other databases:
- EMBL: CP000555 - RefSeq: YP_001019864.1 - ProteinModelPortal: A2SDJ0 - SMR: A2SDJ0 - STRING: A2SDJ0 - MEROPS: M38.982 - GeneID: 4784794 - GenomeReviews: CP000555_GR - KEGG: mpt:Mpe_A0667 - NMPDR: fig|279263.3.peg.3231 - eggNOG: COG0804 - HOGENOM: HBG357507 - OMA: TIHAFHT - ProtClustDB: PRK13207 - BioCyc: MPET420662:MPE_A0667-MONOMER - GO: GO:0005737 - HAMAP: MF_01953 - InterPro: IPR006680 - InterPro: IPR011059 - InterPro: IPR011612 - InterPro: IPR005848 - InterPro: IPR017951 - InterPro: IPR017950 - PRINTS: PR01752 - TIGRFAMs: TIGR01792
Pfam domain/function: PF01979 Amidohydro_1; PF00449 Urease_alpha; SSF51338 Metalo_hydrolase
EC number: =3.5.1.5
Molecular weight: Translated: 61116; Mature: 60985
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: PS01120 UREASE_1; PS00145 UREASE_2; PS51368 UREASE_3
Important sites: ACT_SITE 328-328 BINDING 227-227
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATIGRRAYAEMYGPTVGDRVRLADTELVIEVEADYTLRAGGYGEEVKFGGGKVIRDGMG CCCCCHHHHHHHHCCCCCCEEEEECCEEEEEEECCEEEECCCCCCEEEECCCEEEECCCC QSQRPNGPGPHDAVDCVVTNALILDHWGIVKADIGLRGQRIAAIGKAGNPDVQPGIDIVI CCCCCCCCCCHHHHHHHHHHHHHEECCCEEEECCCCCCCEEEEECCCCCCCCCCCCEEEE GPGTEVIAGEGLIVTAGGIDCHIHFICPQQIEEALSSGVTTMLGGGTGPATGTFATTCTP CCCCCEEECCCEEEEECCCEEEEEEECHHHHHHHHHCCCEEEECCCCCCCCCCEEEECCC GPENIANMLRAADAFPMNLGFFGKGNASRPEALRQQVEAGVIGLKLHEDWGTTPAAIDCC CHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH LSVADEGDVQVAIHSDTLNESGFVEDTIGATKGRTLCAFHTEGAGGGHAPDILRVVGEAN HHHCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCC FLPSSTNPTMPYTVNTLDEHVDMLMVCHHLDAAIAEDLAFAESRIRRETIAAEDILHDLG CCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AISMFSSDSQAMGRVGEVVLRCWQTAHKMKVQRGKLPGDPERHDNGRAKRYVAKYTINPA HHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEEEEEEECCHH IAHGVSHEVGSIEVGKWADLVFWRPAFFGVKPSLVMKGGFIASALMGDANASIPTPQPVH HHHCCCCCCCCEECCCCEEEEEECHHHHCCCHHHEECCCHHHHHHHCCCCCCCCCCCCCE YRPMFGAFGGALTRGSLSFVSQAALASEVGSVYGLRKPLSAVKQCRTVKKGDMVHNAYLP ECCHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHCCCC RMEVDAQTYQVRADGQLLTCEPATALPMTQRYFLF CEEECCEEEEEEECCEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure ATIGRRAYAEMYGPTVGDRVRLADTELVIEVEADYTLRAGGYGEEVKFGGGKVIRDGMG CCCCHHHHHHHHCCCCCCEEEEECCEEEEEEECCEEEECCCCCCEEEECCCEEEECCCC QSQRPNGPGPHDAVDCVVTNALILDHWGIVKADIGLRGQRIAAIGKAGNPDVQPGIDIVI CCCCCCCCCCHHHHHHHHHHHHHEECCCEEEECCCCCCCEEEEECCCCCCCCCCCCEEEE GPGTEVIAGEGLIVTAGGIDCHIHFICPQQIEEALSSGVTTMLGGGTGPATGTFATTCTP CCCCCEEECCCEEEEECCCEEEEEEECHHHHHHHHHCCCEEEECCCCCCCCCCEEEECCC GPENIANMLRAADAFPMNLGFFGKGNASRPEALRQQVEAGVIGLKLHEDWGTTPAAIDCC CHHHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH LSVADEGDVQVAIHSDTLNESGFVEDTIGATKGRTLCAFHTEGAGGGHAPDILRVVGEAN HHHCCCCCEEEEEECCCCCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCC FLPSSTNPTMPYTVNTLDEHVDMLMVCHHLDAAIAEDLAFAESRIRRETIAAEDILHDLG CCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AISMFSSDSQAMGRVGEVVLRCWQTAHKMKVQRGKLPGDPERHDNGRAKRYVAKYTINPA HHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEEEEEEECCHH IAHGVSHEVGSIEVGKWADLVFWRPAFFGVKPSLVMKGGFIASALMGDANASIPTPQPVH HHHCCCCCCCCEECCCCEEEEEECHHHHCCCHHHEECCCHHHHHHHCCCCCCCCCCCCCE YRPMFGAFGGALTRGSLSFVSQAALASEVGSVYGLRKPLSAVKQCRTVKKGDMVHNAYLP ECCHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHCCCC RMEVDAQTYQVRADGQLLTCEPATALPMTQRYFLF CEEECCEEEEEEECCEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA