Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is nagZ [H]

Identifier: 124265848

GI number: 124265848

Start: 687489

End: 688532

Strand: Direct

Name: nagZ [H]

Synonym: Mpe_A0655

Alternate gene names: 124265848

Gene position: 687489-688532 (Clockwise)

Preceding gene: 124265847

Following gene: 124265850

Centisome position: 17.0

GC content: 72.03

Gene sequence:

>1044_bases
ATGAACCACGCCCCCATCGTCCTCGACATCGCGGGGACCGCGCTCGATGCCAACGACCGGCGCCGCCTGCGTCACCCGCT
GGTCGGCGGGCTGATCCTGTTCGCCCGCAACTGGCAGCACCGCGCCCAGCTGACCTCGCTCACCGCGGAGATCAAGGCGC
TGCGCCCCGACGTGCTGGTGTGCGTCGACCATGAAGGCGGGCGCGTGCAGCGCTTCCGCAGCGACGGCTTCACCCACCTG
CCGCCGATGCGGGCGCTGGGCGAACGCTGGATGCAGGATGCACTGGCCGCCACCGATGCCGCCACCGCCTGCGGCTACGT
GCTGGCCGCCGAACTGCGTGCCTGTGGCGTCGATTTCAGCTTCGCGCCGGTGCTCGACCTCGACCACGGGCCGAGCGGCG
TGATCGGCGACCGTGCCTTCCACCGCGATCCGCGCGTGGCCACGCTGCTGGCCAAGAGCCTGATGCACGGCCTGCTGCTG
GCCGGCATGGCGAGCTGCGGCAAGCATTTCCCGGGGCACGGCTACGTGGCCGCCGATTCGCACACCGAGGTACCGGTCGA
TCGCCGCACGCTGCGCCAGATCCTCGGCGACGATGCCCGGCCCTACGAGTGGCTCTCCACCTCGCTCCCCAGCGTGATGC
CGGCGCACGTGATCTACCCGAAGGTCGATGCGCGGCCCGCCGGCTTCTCGCCGCGCTGGCTGCAGGACATCCTGCGCGGC
CGGCTCGGCTTCACCGGCGCGATCTTCAGCGACGACCTCAGTATGCAGGGCGCGACCGTCGCCGGCACGCCTACCGAGGC
CGGCATCGCCGCGCTGAACGCCGGCTGCGACCTGGTGCTGCTGTGCAACCAGTCTCTCGACGGCGGCGCACCGCTCGATG
CGCTGATCGACGGGTTGGAGACGGCGCTCGAGCGTGGCCGCTGGCAGGCCAGCGCCGACAGCGAGGCGCGCCGCCTCGAC
CTGCTGCCGCAGGCGGCGCCGTTGCCCTGGGACGAGCTGATGCACCACGCGCCCTACCAGCGCGCGCTCGACCAACTGCC
CTGA

Upstream 100 bases:

>100_bases
CGCCTGGTTCGAGGCACAGGGCCTGCGCGCCCACGTCAGCGTCACCGACGAAACCGACTACGCGGCGAGCTTCGTCGTGG
TCGAGACCCAGGAAACCTAG

Downstream 100 bases:

>100_bases
GGGGATGCCGTGCCGCCGGTACCGCGGCCCATGAAAAAACGCCCCCGGGCCGCGAAGACTCGGGGGCGTTGTCCTCCGCC
CTGGCGCGGGCTCAGCGGCC

Product: glycosyl hydrolase family protein

Products: NA

Alternate protein names: Beta-N-acetylhexosaminidase; N-acetyl-beta-glucosaminidase [H]

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MNHAPIVLDIAGTALDANDRRRLRHPLVGGLILFARNWQHRAQLTSLTAEIKALRPDVLVCVDHEGGRVQRFRSDGFTHL
PPMRALGERWMQDALAATDAATACGYVLAAELRACGVDFSFAPVLDLDHGPSGVIGDRAFHRDPRVATLLAKSLMHGLLL
AGMASCGKHFPGHGYVAADSHTEVPVDRRTLRQILGDDARPYEWLSTSLPSVMPAHVIYPKVDARPAGFSPRWLQDILRG
RLGFTGAIFSDDLSMQGATVAGTPTEAGIAALNAGCDLVLLCNQSLDGGAPLDALIDGLETALERGRWQASADSEARRLD
LLPQAAPLPWDELMHHAPYQRALDQLP

Sequences:

>Translated_347_residues
MNHAPIVLDIAGTALDANDRRRLRHPLVGGLILFARNWQHRAQLTSLTAEIKALRPDVLVCVDHEGGRVQRFRSDGFTHL
PPMRALGERWMQDALAATDAATACGYVLAAELRACGVDFSFAPVLDLDHGPSGVIGDRAFHRDPRVATLLAKSLMHGLLL
AGMASCGKHFPGHGYVAADSHTEVPVDRRTLRQILGDDARPYEWLSTSLPSVMPAHVIYPKVDARPAGFSPRWLQDILRG
RLGFTGAIFSDDLSMQGATVAGTPTEAGIAALNAGCDLVLLCNQSLDGGAPLDALIDGLETALERGRWQASADSEARRLD
LLPQAAPLPWDELMHHAPYQRALDQLP
>Mature_347_residues
MNHAPIVLDIAGTALDANDRRRLRHPLVGGLILFARNWQHRAQLTSLTAEIKALRPDVLVCVDHEGGRVQRFRSDGFTHL
PPMRALGERWMQDALAATDAATACGYVLAAELRACGVDFSFAPVLDLDHGPSGVIGDRAFHRDPRVATLLAKSLMHGLLL
AGMASCGKHFPGHGYVAADSHTEVPVDRRTLRQILGDDARPYEWLSTSLPSVMPAHVIYPKVDARPAGFSPRWLQDILRG
RLGFTGAIFSDDLSMQGATVAGTPTEAGIAALNAGCDLVLLCNQSLDGGAPLDALIDGLETALERGRWQASADSEARRLD
LLPQAAPLPWDELMHHAPYQRALDQLP

Specific function: Cleaves GlcNAc linked beta-1,4 to MurNAc tripeptides [H]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family. NagZ subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=298, Percent_Identity=47.6510067114094, Blast_Score=259, Evalue=2e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022956
- InterPro:   IPR019800
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3 [H]

EC number: =3.2.1.52 [H]

Molecular weight: Translated: 37562; Mature: 37562

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHAPIVLDIAGTALDANDRRRLRHPLVGGLILFARNWQHRAQLTSLTAEIKALRPDVLV
CCCCCEEEEECCCEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEE
CVDHEGGRVQRFRSDGFTHLPPMRALGERWMQDALAATDAATACGYVLAAELRACGVDFS
EEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FAPVLDLDHGPSGVIGDRAFHRDPRVATLLAKSLMHGLLLAGMASCGKHFPGHGYVAADS
CCCEEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
HTEVPVDRRTLRQILGDDARPYEWLSTSLPSVMPAHVIYPKVDARPAGFSPRWLQDILRG
CCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHH
RLGFTGAIFSDDLSMQGATVAGTPTEAGIAALNAGCDLVLLCNQSLDGGAPLDALIDGLE
HCCCCEEEECCCCCCCCCEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHH
TALERGRWQASADSEARRLDLLPQAAPLPWDELMHHAPYQRALDQLP
HHHHCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHCCC
>Mature Secondary Structure
MNHAPIVLDIAGTALDANDRRRLRHPLVGGLILFARNWQHRAQLTSLTAEIKALRPDVLV
CCCCCEEEEECCCEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEE
CVDHEGGRVQRFRSDGFTHLPPMRALGERWMQDALAATDAATACGYVLAAELRACGVDFS
EEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FAPVLDLDHGPSGVIGDRAFHRDPRVATLLAKSLMHGLLLAGMASCGKHFPGHGYVAADS
CCCEEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
HTEVPVDRRTLRQILGDDARPYEWLSTSLPSVMPAHVIYPKVDARPAGFSPRWLQDILRG
CCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHH
RLGFTGAIFSDDLSMQGATVAGTPTEAGIAALNAGCDLVLLCNQSLDGGAPLDALIDGLE
HCCCCEEEECCCCCCCCCEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHH
TALERGRWQASADSEARRLDLLPQAAPLPWDELMHHAPYQRALDQLP
HHHHCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA