| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is nagZ [H]
Identifier: 124265848
GI number: 124265848
Start: 687489
End: 688532
Strand: Direct
Name: nagZ [H]
Synonym: Mpe_A0655
Alternate gene names: 124265848
Gene position: 687489-688532 (Clockwise)
Preceding gene: 124265847
Following gene: 124265850
Centisome position: 17.0
GC content: 72.03
Gene sequence:
>1044_bases ATGAACCACGCCCCCATCGTCCTCGACATCGCGGGGACCGCGCTCGATGCCAACGACCGGCGCCGCCTGCGTCACCCGCT GGTCGGCGGGCTGATCCTGTTCGCCCGCAACTGGCAGCACCGCGCCCAGCTGACCTCGCTCACCGCGGAGATCAAGGCGC TGCGCCCCGACGTGCTGGTGTGCGTCGACCATGAAGGCGGGCGCGTGCAGCGCTTCCGCAGCGACGGCTTCACCCACCTG CCGCCGATGCGGGCGCTGGGCGAACGCTGGATGCAGGATGCACTGGCCGCCACCGATGCCGCCACCGCCTGCGGCTACGT GCTGGCCGCCGAACTGCGTGCCTGTGGCGTCGATTTCAGCTTCGCGCCGGTGCTCGACCTCGACCACGGGCCGAGCGGCG TGATCGGCGACCGTGCCTTCCACCGCGATCCGCGCGTGGCCACGCTGCTGGCCAAGAGCCTGATGCACGGCCTGCTGCTG GCCGGCATGGCGAGCTGCGGCAAGCATTTCCCGGGGCACGGCTACGTGGCCGCCGATTCGCACACCGAGGTACCGGTCGA TCGCCGCACGCTGCGCCAGATCCTCGGCGACGATGCCCGGCCCTACGAGTGGCTCTCCACCTCGCTCCCCAGCGTGATGC CGGCGCACGTGATCTACCCGAAGGTCGATGCGCGGCCCGCCGGCTTCTCGCCGCGCTGGCTGCAGGACATCCTGCGCGGC CGGCTCGGCTTCACCGGCGCGATCTTCAGCGACGACCTCAGTATGCAGGGCGCGACCGTCGCCGGCACGCCTACCGAGGC CGGCATCGCCGCGCTGAACGCCGGCTGCGACCTGGTGCTGCTGTGCAACCAGTCTCTCGACGGCGGCGCACCGCTCGATG CGCTGATCGACGGGTTGGAGACGGCGCTCGAGCGTGGCCGCTGGCAGGCCAGCGCCGACAGCGAGGCGCGCCGCCTCGAC CTGCTGCCGCAGGCGGCGCCGTTGCCCTGGGACGAGCTGATGCACCACGCGCCCTACCAGCGCGCGCTCGACCAACTGCC CTGA
Upstream 100 bases:
>100_bases CGCCTGGTTCGAGGCACAGGGCCTGCGCGCCCACGTCAGCGTCACCGACGAAACCGACTACGCGGCGAGCTTCGTCGTGG TCGAGACCCAGGAAACCTAG
Downstream 100 bases:
>100_bases GGGGATGCCGTGCCGCCGGTACCGCGGCCCATGAAAAAACGCCCCCGGGCCGCGAAGACTCGGGGGCGTTGTCCTCCGCC CTGGCGCGGGCTCAGCGGCC
Product: glycosyl hydrolase family protein
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 347; Mature: 347
Protein sequence:
>347_residues MNHAPIVLDIAGTALDANDRRRLRHPLVGGLILFARNWQHRAQLTSLTAEIKALRPDVLVCVDHEGGRVQRFRSDGFTHL PPMRALGERWMQDALAATDAATACGYVLAAELRACGVDFSFAPVLDLDHGPSGVIGDRAFHRDPRVATLLAKSLMHGLLL AGMASCGKHFPGHGYVAADSHTEVPVDRRTLRQILGDDARPYEWLSTSLPSVMPAHVIYPKVDARPAGFSPRWLQDILRG RLGFTGAIFSDDLSMQGATVAGTPTEAGIAALNAGCDLVLLCNQSLDGGAPLDALIDGLETALERGRWQASADSEARRLD LLPQAAPLPWDELMHHAPYQRALDQLP
Sequences:
>Translated_347_residues MNHAPIVLDIAGTALDANDRRRLRHPLVGGLILFARNWQHRAQLTSLTAEIKALRPDVLVCVDHEGGRVQRFRSDGFTHL PPMRALGERWMQDALAATDAATACGYVLAAELRACGVDFSFAPVLDLDHGPSGVIGDRAFHRDPRVATLLAKSLMHGLLL AGMASCGKHFPGHGYVAADSHTEVPVDRRTLRQILGDDARPYEWLSTSLPSVMPAHVIYPKVDARPAGFSPRWLQDILRG RLGFTGAIFSDDLSMQGATVAGTPTEAGIAALNAGCDLVLLCNQSLDGGAPLDALIDGLETALERGRWQASADSEARRLD LLPQAAPLPWDELMHHAPYQRALDQLP >Mature_347_residues MNHAPIVLDIAGTALDANDRRRLRHPLVGGLILFARNWQHRAQLTSLTAEIKALRPDVLVCVDHEGGRVQRFRSDGFTHL PPMRALGERWMQDALAATDAATACGYVLAAELRACGVDFSFAPVLDLDHGPSGVIGDRAFHRDPRVATLLAKSLMHGLLL AGMASCGKHFPGHGYVAADSHTEVPVDRRTLRQILGDDARPYEWLSTSLPSVMPAHVIYPKVDARPAGFSPRWLQDILRG RLGFTGAIFSDDLSMQGATVAGTPTEAGIAALNAGCDLVLLCNQSLDGGAPLDALIDGLETALERGRWQASADSEARRLD LLPQAAPLPWDELMHHAPYQRALDQLP
Specific function: Cleaves GlcNAc linked beta-1,4 to MurNAc tripeptides [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family. NagZ subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787350, Length=298, Percent_Identity=47.6510067114094, Blast_Score=259, Evalue=2e-70,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022956 - InterPro: IPR019800 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3 [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 37562; Mature: 37562
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHAPIVLDIAGTALDANDRRRLRHPLVGGLILFARNWQHRAQLTSLTAEIKALRPDVLV CCCCCEEEEECCCEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEE CVDHEGGRVQRFRSDGFTHLPPMRALGERWMQDALAATDAATACGYVLAAELRACGVDFS EEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FAPVLDLDHGPSGVIGDRAFHRDPRVATLLAKSLMHGLLLAGMASCGKHFPGHGYVAADS CCCEEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC HTEVPVDRRTLRQILGDDARPYEWLSTSLPSVMPAHVIYPKVDARPAGFSPRWLQDILRG CCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHH RLGFTGAIFSDDLSMQGATVAGTPTEAGIAALNAGCDLVLLCNQSLDGGAPLDALIDGLE HCCCCEEEECCCCCCCCCEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHH TALERGRWQASADSEARRLDLLPQAAPLPWDELMHHAPYQRALDQLP HHHHCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHCCC >Mature Secondary Structure MNHAPIVLDIAGTALDANDRRRLRHPLVGGLILFARNWQHRAQLTSLTAEIKALRPDVLV CCCCCEEEEECCCEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEE CVDHEGGRVQRFRSDGFTHLPPMRALGERWMQDALAATDAATACGYVLAAELRACGVDFS EEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC FAPVLDLDHGPSGVIGDRAFHRDPRVATLLAKSLMHGLLLAGMASCGKHFPGHGYVAADS CCCEEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC HTEVPVDRRTLRQILGDDARPYEWLSTSLPSVMPAHVIYPKVDARPAGFSPRWLQDILRG CCCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHH RLGFTGAIFSDDLSMQGATVAGTPTEAGIAALNAGCDLVLLCNQSLDGGAPLDALIDGLE HCCCCEEEECCCCCCCCCEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHH TALERGRWQASADSEARRLDLLPQAAPLPWDELMHHAPYQRALDQLP HHHHCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA