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The map label for this gene is kpsD [H]

Identifier: 124265814

GI number: 124265814

Start: 655208

End: 657028

Strand: Reverse

Name: kpsD [H]

Synonym: Mpe_A0621

Alternate gene names: 124265814

Gene position: 657028-655208 (Counterclockwise)

Preceding gene: 124265815

Following gene: 124265813

Centisome position: 16.25

GC content: 68.86

Gene sequence:

>1821_bases
ATGAACCGTTCCGCCCCCGCCCTGCGGCTTGCCAACTTTGGTCCTGCGTTGCGCCGTGCCGTTGCGGCGCTGCTGCTGAC
GAGCACCGTGCTGCTGGCGGCAGCGCCAGCCGCCGCGCAGGTCTCCTCCGCCGCCAGCAGCCCTGAGGCCGTCGACCCGT
CCTCGCCCTACGGCGCCACCGGCGTACCCACGCCCGAGTTGATGTGGTCGCAGCCCGCCGGCGCCGCGTCGCGGGCACCG
GCAGGAGCTTCACCGCAGCAGCGCAACGGCCTGCCGCCGGTGCCGCCGCTGCCCGCGGCCTCCGCGCCGCTGCGCATGCC
GCCCGACCCCGCGACCGCGCTCACGCCGATCGTGTTCGGGTCGCAGATCTTCGTCGGGCGCTTCGGCGTGTCGCCCTACA
CCGGTTTCAACCCGGAGTACCAGATCGCTGTGGGCGACCGCATCAACGTGCGCATGTGGGGTGCGTTCAACTTCGAGGCG
ACGCAGCAGGTCGATGCGCAGGGCAACGTGTTCGTGCCCAACATCGGTCCGGTGCGTGTGCTCGGCGTGCGCAACGCCGA
CCTGAACGACCAGTTCTCGGCACAGGTCAAGCGCGTGTTCCGCAGCAATGTCGGCGTCTACGCGACGCTGGCAGCCGCCC
AGCCGGTCAAGGTCTACGTCACCGGATTCGTGCGCGCCCCCGGTCTGTACGGCGGCCTGTCGTCGGACTCGGTGCTGTAT
TACCTGGACAAGGCCGGCGGCATCGATCCAGACCGCGGCAGTTACCTCGAAGTGGATGTGCTGCGCGGCGGCAAGCTGCG
CGCGAAGTTCAACCTCTACAGCTTCCTGCTCGATGGCCGCATCGAGCACGTCCAACTGCAGGACGGCGACACCATCGTGG
CCCATCCGCGCAAGTTCACGGTGCAGGTCGGCGGCGAGGTGCTCAACCCCTACATCTTCGAGTTCGGTAGTGAACGCATA
CCGGCCTCGCAGGTGCTGGCGGTAGCACGGCCCAAACCGGGCGCGACGCATATCAGCATCGCACGCCAGGTCGGTCTTGA
GCGCCGCAGCGAGTACCACCCGCTGTCGGCGCTGTCGGGCGTGAGCGTGGAGAACGGCGACGAGGTCCTGGTCACCTCCG
ACAAGTACCCCGGCACGCTGCTGGTCCGCATAGACGGCGCCCACCTCGGCCCGCGCACGCTGGTGCTGCCGTACGGCGCA
CGCCTGCGCGACGCGATCGCTCAGATGCAGCCGGCCCCGCAGGCCAACGTCGCCGCGGTGCAGCTGTTCCGCCGCTCGGT
CGCGCAGCGGCAGAAGGAGATGCTGGATGCCTCGCTGCGCAACCTCGAGACCTACGCGCTGACCGCGCGCAGCGCCACCA
GCGAGGAGGCCAACCTGCGCACCCGCGAGGCCGAGCTGATCCTGAAGTTCATCGAGCGCGCACGGATGGTCCAACCCAAG
GGCCAGGTGCTGCTGGCCCAGCGCGAAGAGGCCGGCAACACGCTGCTCGAGGATGGCGATGTGATCAAGGTGCCGGAGCA
GAGCAACCTGGTGCTGGTGAGCGGCGAGGTGATCCTGCCCAATGCGCTGGTGTACGACCCGCGCGCCGGCGTCGAGGATT
ACATCCGTCGGTCCGGCGGCTACACGCAGGGCGCCAATGAGGCCCGCGTGCTGGTGCTGCGGCAGGACGGCAGCGTGGTC
GAGAATACCCGTCAGCTGATGCCCGGCGACGAGATCCTGGTCATGCCGAAGATCCAGACCAAGAGCATCGAGATCGCGCG
CGGCCTGACGCAGATCCTGTACCAGATCGCCATCGCGGCGAAGGTCGCACTCGACCTCTGA

Upstream 100 bases:

>100_bases
GTACAACCTGGCCACGCTGTTCGTCGTGTGCTGCCTGCTTTACGGCGTGACGCGCCTTGTCGTCACGACGGTCCGCGACC
ACCAAGACTGACCGAACGCC

Downstream 100 bases:

>100_bases
GGCGACGGCACGCGCCGAACCCGTCGGAGCCGAACATGATCGGACCGGTCTCGCTTTCTCGCGCCGGCGCGCGGATCGCC
GCGATGGCCGGGTTGCTGCT

Product: KpsD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 606; Mature: 606

Protein sequence:

>606_residues
MNRSAPALRLANFGPALRRAVAALLLTSTVLLAAAPAAAQVSSAASSPEAVDPSSPYGATGVPTPELMWSQPAGAASRAP
AGASPQQRNGLPPVPPLPAASAPLRMPPDPATALTPIVFGSQIFVGRFGVSPYTGFNPEYQIAVGDRINVRMWGAFNFEA
TQQVDAQGNVFVPNIGPVRVLGVRNADLNDQFSAQVKRVFRSNVGVYATLAAAQPVKVYVTGFVRAPGLYGGLSSDSVLY
YLDKAGGIDPDRGSYLEVDVLRGGKLRAKFNLYSFLLDGRIEHVQLQDGDTIVAHPRKFTVQVGGEVLNPYIFEFGSERI
PASQVLAVARPKPGATHISIARQVGLERRSEYHPLSALSGVSVENGDEVLVTSDKYPGTLLVRIDGAHLGPRTLVLPYGA
RLRDAIAQMQPAPQANVAAVQLFRRSVAQRQKEMLDASLRNLETYALTARSATSEEANLRTREAELILKFIERARMVQPK
GQVLLAQREEAGNTLLEDGDVIKVPEQSNLVLVSGEVILPNALVYDPRAGVEDYIRRSGGYTQGANEARVLVLRQDGSVV
ENTRQLMPGDEILVMPKIQTKSIEIARGLTQILYQIAIAAKVALDL

Sequences:

>Translated_606_residues
MNRSAPALRLANFGPALRRAVAALLLTSTVLLAAAPAAAQVSSAASSPEAVDPSSPYGATGVPTPELMWSQPAGAASRAP
AGASPQQRNGLPPVPPLPAASAPLRMPPDPATALTPIVFGSQIFVGRFGVSPYTGFNPEYQIAVGDRINVRMWGAFNFEA
TQQVDAQGNVFVPNIGPVRVLGVRNADLNDQFSAQVKRVFRSNVGVYATLAAAQPVKVYVTGFVRAPGLYGGLSSDSVLY
YLDKAGGIDPDRGSYLEVDVLRGGKLRAKFNLYSFLLDGRIEHVQLQDGDTIVAHPRKFTVQVGGEVLNPYIFEFGSERI
PASQVLAVARPKPGATHISIARQVGLERRSEYHPLSALSGVSVENGDEVLVTSDKYPGTLLVRIDGAHLGPRTLVLPYGA
RLRDAIAQMQPAPQANVAAVQLFRRSVAQRQKEMLDASLRNLETYALTARSATSEEANLRTREAELILKFIERARMVQPK
GQVLLAQREEAGNTLLEDGDVIKVPEQSNLVLVSGEVILPNALVYDPRAGVEDYIRRSGGYTQGANEARVLVLRQDGSVV
ENTRQLMPGDEILVMPKIQTKSIEIARGLTQILYQIAIAAKVALDL
>Mature_606_residues
MNRSAPALRLANFGPALRRAVAALLLTSTVLLAAAPAAAQVSSAASSPEAVDPSSPYGATGVPTPELMWSQPAGAASRAP
AGASPQQRNGLPPVPPLPAASAPLRMPPDPATALTPIVFGSQIFVGRFGVSPYTGFNPEYQIAVGDRINVRMWGAFNFEA
TQQVDAQGNVFVPNIGPVRVLGVRNADLNDQFSAQVKRVFRSNVGVYATLAAAQPVKVYVTGFVRAPGLYGGLSSDSVLY
YLDKAGGIDPDRGSYLEVDVLRGGKLRAKFNLYSFLLDGRIEHVQLQDGDTIVAHPRKFTVQVGGEVLNPYIFEFGSERI
PASQVLAVARPKPGATHISIARQVGLERRSEYHPLSALSGVSVENGDEVLVTSDKYPGTLLVRIDGAHLGPRTLVLPYGA
RLRDAIAQMQPAPQANVAAVQLFRRSVAQRQKEMLDASLRNLETYALTARSATSEEANLRTREAELILKFIERARMVQPK
GQVLLAQREEAGNTLLEDGDVIKVPEQSNLVLVSGEVILPNALVYDPRAGVEDYIRRSGGYTQGANEARVLVLRQDGSVV
ENTRQLMPGDEILVMPKIQTKSIEIARGLTQILYQIAIAAKVALDL

Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli K5 kpsD [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 65071; Mature: 65071

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRSAPALRLANFGPALRRAVAALLLTSTVLLAAAPAAAQVSSAASSPEAVDPSSPYGAT
CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCC
GVPTPELMWSQPAGAASRAPAGASPQQRNGLPPVPPLPAASAPLRMPPDPATALTPIVFG
CCCCCHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
SQIFVGRFGVSPYTGFNPEYQIAVGDRINVRMWGAFNFEATQQVDAQGNVFVPNIGPVRV
CEEEEEEECCCCCCCCCCCEEEEECCEEEEEEEEEECCCCCCEECCCCCEECCCCCCEEE
LGVRNADLNDQFSAQVKRVFRSNVGVYATLAAAQPVKVYVTGFVRAPGLYGGLSSDSVLY
EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEE
YLDKAGGIDPDRGSYLEVDVLRGGKLRAKFNLYSFLLDGRIEHVQLQDGDTIVAHPRKFT
EEECCCCCCCCCCCEEEEEEECCCEEEEEEHHEEHHHCCCEEEEEEECCCEEEECCCEEE
VQVGGEVLNPYIFEFGSERIPASQVLAVARPKPGATHISIARQVGLERRSEYHPLSALSG
EEECCHHHCCHHHHCCCCCCCHHHEEEEECCCCCCHHHHHHHHHCHHHHCCCCCHHHHCC
VSVENGDEVLVTSDKYPGTLLVRIDGAHLGPRTLVLPYGARLRDAIAQMQPAPQANVAAV
CCCCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHCCCCCCCHHHHH
QLFRRSVAQRQKEMLDASLRNLETYALTARSATSEEANLRTREAELILKFIERARMVQPK
HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
GQVLLAQREEAGNTLLEDGDVIKVPEQSNLVLVSGEVILPNALVYDPRAGVEDYIRRSGG
CCEEEEECCCCCCCEECCCCEEECCCCCCEEEEECCEEECCEEEECCCCCHHHHHHHCCC
YTQGANEARVLVLRQDGSVVENTRQLMPGDEILVMPKIQTKSIEIARGLTQILYQIAIAA
CCCCCCCEEEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
KVALDL
HHEECC
>Mature Secondary Structure
MNRSAPALRLANFGPALRRAVAALLLTSTVLLAAAPAAAQVSSAASSPEAVDPSSPYGAT
CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCC
GVPTPELMWSQPAGAASRAPAGASPQQRNGLPPVPPLPAASAPLRMPPDPATALTPIVFG
CCCCCHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC
SQIFVGRFGVSPYTGFNPEYQIAVGDRINVRMWGAFNFEATQQVDAQGNVFVPNIGPVRV
CEEEEEEECCCCCCCCCCCEEEEECCEEEEEEEEEECCCCCCEECCCCCEECCCCCCEEE
LGVRNADLNDQFSAQVKRVFRSNVGVYATLAAAQPVKVYVTGFVRAPGLYGGLSSDSVLY
EEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEE
YLDKAGGIDPDRGSYLEVDVLRGGKLRAKFNLYSFLLDGRIEHVQLQDGDTIVAHPRKFT
EEECCCCCCCCCCCEEEEEEECCCEEEEEEHHEEHHHCCCEEEEEEECCCEEEECCCEEE
VQVGGEVLNPYIFEFGSERIPASQVLAVARPKPGATHISIARQVGLERRSEYHPLSALSG
EEECCHHHCCHHHHCCCCCCCHHHEEEEECCCCCCHHHHHHHHHCHHHHCCCCCHHHHCC
VSVENGDEVLVTSDKYPGTLLVRIDGAHLGPRTLVLPYGARLRDAIAQMQPAPQANVAAV
CCCCCCCEEEEECCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHCCCCCCCHHHHH
QLFRRSVAQRQKEMLDASLRNLETYALTARSATSEEANLRTREAELILKFIERARMVQPK
HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
GQVLLAQREEAGNTLLEDGDVIKVPEQSNLVLVSGEVILPNALVYDPRAGVEDYIRRSGG
CCEEEEECCCCCCCEECCCCEEECCCCCCEEEEECCEEECCEEEECCCCCHHHHHHHCCC
YTQGANEARVLVLRQDGSVVENTRQLMPGDEILVMPKIQTKSIEIARGLTQILYQIAIAA
CCCCCCCEEEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
KVALDL
HHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021185 [H]