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The map label for this gene is stc [H]

Identifier: 124265672

GI number: 124265672

Start: 519979

End: 522117

Strand: Reverse

Name: stc [H]

Synonym: Mpe_A0479

Alternate gene names: 124265672

Gene position: 522117-519979 (Counterclockwise)

Preceding gene: 124265675

Following gene: 124265669

Centisome position: 12.91

GC content: 69.89

Gene sequence:

>2139_bases
ATGACCGCATCCCCCACCGCGACGCGCGCTGCCCAGCGTGACAGCCGGCGCCCGTCCGGGTTCGGCCATTCCGCGACGAG
CGTCTGGCTGCCGCCGGACCCGGGTCACGTCGACACCATCGCGCAGTCGCATGAACGCTGTGCCTCGCTGCGGCTGAGCC
CGATCCGGCCGCCGGACCACACCCCGCTGATGCGCTCGGATCTGGCGGTGGCCCGGGAGCGCAACCGCTGTCTGTCGCTC
CATGCGGTGCCGGTGATGGAGATGCTGCTGGAGCAGATTCTCGCGACGCAGAGCATGGTGCTGCTGACCGACGTGCAGGG
CACGGTGCTGCATTCGATCGGTCACGACGACTTCCTGACGCGTGCGTCCAAGGTCGCGCTGGCGCCGGGCGTCAACTGGA
GCGAATCGAGCAAGGGCACCAACGCCATCGGGACCGCGCTGGTCACCGAAACGCCGACCATCGTGCATGCCGACGAGCAC
TTCGTCCACGCCAACCAGTTCCTGACCTGCTCGTCCTCGCCGATCTTCGATCCGCGCGGCAACCTGGTCGGCGTGCTCGA
CGTCAGCGGCGATCACCACTCCTTCCACGTCCACACGATGGGCCTGGTGAAGATGTCGGCGCGCATGATCCAGAACCACT
GGCTGATCGAGGACAGCCACCAGACCCTGCGCCTGCATTTCCACCTGCGTCGCGACTATCTCGGCACGCTGATGGAAGGC
ATCGTCTCCGTCGGGCAGGACGGCAAGCTGCTAGCCGCCAATCGCGCCGCACTGGACATGCTGCGCCTGTCGGGCGCGGC
CTTGCGGATGAATACGGTCACCGGCCTGTTCGGCGTGTCGCTCGGAGCGCTGGTCGACCATTTCGGCTCGACGCTGTCGA
CGCCACTGGAGCTGAGCCTGCCCGACGGCCGCCAGATCCATGCGAACGCCCGCTTCAATGGCACCGGCTGGCACCAACTG
GGCCGCGCCCGTGACGATCAGCCGGAGGCGCTCGCCCACGAGGCGGCCCGCGAGCCGGCCGCCCGCGACGCGCTGCCCGA
CACCGCTCGCGAACCGACGGCCCATCCCAATGCCGTGCCGCCGTCGCCGAGCCTGCGACAGCTGCAGACCGGGGATGCGC
GCATGGACGACGTGGTCACGCGCGTCAAGCGAGTGCTCGACCGCGACATCCCGGTGCTGATCCAGGGCGAGACCGGCACC
GGCAAGGAAATGCTGGCCCGCGCGATCCACCAGGGCTCGCGTCGCGCCAGCGGCCCCTTCATTGCCGTCAACTGCGCATC
GATCCCCGAGACCCTGATCGAGTCGGAGCTGTTCGGCTACGAGGAAGGCGCGTTCACCGGCGCGCGCCGCAAGGGCGCCG
TGGGCAAGGTCCTGCAGGCGCACGGCGGCACGCTGTTCCTCGACGAGATCGGCGACATGCCGCTGGGCCTGCAGGCGCGG
CTGCTGCGGGTGCTGCAGGAACGTGAGGTCACGCCGCTCGGTGGCACGCGGGCGCTGCCGGTCGATGTGTCGGTCATCAG
CGCGACCCATCAACCGCTGCGAGAACTGATCGACCGCAAGCAGTTTCGCGAGGACCTGTACTACCGCTTGAACGGCCTGG
TGGTGCAGCTGCCGGCGCTGCGCGAGCGCACCGACCTGCTGGCGCTGACCGAGAAGCTGCTCAAGCGCGAGTGCCGTGGT
CGTCTGCTGCGCCTCGACGCCGAGGTGTTGCGGCTGATGCAGGCTTGCCGCTGGCCGGGCAATATCCGCCAGTTGGCCAC
CGTGCTGCGCACCGCGGTGGCGATGGCTGGCGACGATGCCGTGATCACCGTCGACCACCTGTCCGAAGACTTTCTGCAGG
ATGCGCGTCGCACACTGGACGAGGAGCCCGCCTCGGTCGCCGCCTCTCGGCCGCCGGTGAGCATGGCCCAGCACGCCGAG
CCGCGTCCCTCGGACGCGGCAGCACCCGACGGCCTCGGCAGCGCCCAGGTCGGCGAAGCGCCGGGCGGACGCAGCACGCT
GCACCAGCTCGAGCACGACACCGTCCGCCGCGCGCTGGCCGAGGCCGGCGGCAACATCTCGGTCGCCGCCCGGCGACTGG
GCATCAGCCGCAACACGATCTACCGCAAGCTCTACTGGCCGCCAGGCGCGGGCCGCTGA

Upstream 100 bases:

>100_bases
TCAGGCAGTGACGACAAGGCGTTCAAACGCCTGAGCAATGGACACACAGCAGAGGCGGCTGCCGGCCGCCCGAGAGGGCT
GACGCCCCCAAGGAGACACG

Downstream 100 bases:

>100_bases
GCGCCACCGGGTGCAGTGCCGGCGAAAACCAGGTCCGGACGGACCTGCGTCGGCGCCGGCACCGCGCCGTGGTCAGAGCT
CGACCAGGCCGTTCTGCGCC

Product: Fis family GAF modulated sigma54 specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 712; Mature: 711

Protein sequence:

>712_residues
MTASPTATRAAQRDSRRPSGFGHSATSVWLPPDPGHVDTIAQSHERCASLRLSPIRPPDHTPLMRSDLAVARERNRCLSL
HAVPVMEMLLEQILATQSMVLLTDVQGTVLHSIGHDDFLTRASKVALAPGVNWSESSKGTNAIGTALVTETPTIVHADEH
FVHANQFLTCSSSPIFDPRGNLVGVLDVSGDHHSFHVHTMGLVKMSARMIQNHWLIEDSHQTLRLHFHLRRDYLGTLMEG
IVSVGQDGKLLAANRAALDMLRLSGAALRMNTVTGLFGVSLGALVDHFGSTLSTPLELSLPDGRQIHANARFNGTGWHQL
GRARDDQPEALAHEAAREPAARDALPDTAREPTAHPNAVPPSPSLRQLQTGDARMDDVVTRVKRVLDRDIPVLIQGETGT
GKEMLARAIHQGSRRASGPFIAVNCASIPETLIESELFGYEEGAFTGARRKGAVGKVLQAHGGTLFLDEIGDMPLGLQAR
LLRVLQEREVTPLGGTRALPVDVSVISATHQPLRELIDRKQFREDLYYRLNGLVVQLPALRERTDLLALTEKLLKRECRG
RLLRLDAEVLRLMQACRWPGNIRQLATVLRTAVAMAGDDAVITVDHLSEDFLQDARRTLDEEPASVAASRPPVSMAQHAE
PRPSDAAAPDGLGSAQVGEAPGGRSTLHQLEHDTVRRALAEAGGNISVAARRLGISRNTIYRKLYWPPGAGR

Sequences:

>Translated_712_residues
MTASPTATRAAQRDSRRPSGFGHSATSVWLPPDPGHVDTIAQSHERCASLRLSPIRPPDHTPLMRSDLAVARERNRCLSL
HAVPVMEMLLEQILATQSMVLLTDVQGTVLHSIGHDDFLTRASKVALAPGVNWSESSKGTNAIGTALVTETPTIVHADEH
FVHANQFLTCSSSPIFDPRGNLVGVLDVSGDHHSFHVHTMGLVKMSARMIQNHWLIEDSHQTLRLHFHLRRDYLGTLMEG
IVSVGQDGKLLAANRAALDMLRLSGAALRMNTVTGLFGVSLGALVDHFGSTLSTPLELSLPDGRQIHANARFNGTGWHQL
GRARDDQPEALAHEAAREPAARDALPDTAREPTAHPNAVPPSPSLRQLQTGDARMDDVVTRVKRVLDRDIPVLIQGETGT
GKEMLARAIHQGSRRASGPFIAVNCASIPETLIESELFGYEEGAFTGARRKGAVGKVLQAHGGTLFLDEIGDMPLGLQAR
LLRVLQEREVTPLGGTRALPVDVSVISATHQPLRELIDRKQFREDLYYRLNGLVVQLPALRERTDLLALTEKLLKRECRG
RLLRLDAEVLRLMQACRWPGNIRQLATVLRTAVAMAGDDAVITVDHLSEDFLQDARRTLDEEPASVAASRPPVSMAQHAE
PRPSDAAAPDGLGSAQVGEAPGGRSTLHQLEHDTVRRALAEAGGNISVAARRLGISRNTIYRKLYWPPGAGR
>Mature_711_residues
TASPTATRAAQRDSRRPSGFGHSATSVWLPPDPGHVDTIAQSHERCASLRLSPIRPPDHTPLMRSDLAVARERNRCLSLH
AVPVMEMLLEQILATQSMVLLTDVQGTVLHSIGHDDFLTRASKVALAPGVNWSESSKGTNAIGTALVTETPTIVHADEHF
VHANQFLTCSSSPIFDPRGNLVGVLDVSGDHHSFHVHTMGLVKMSARMIQNHWLIEDSHQTLRLHFHLRRDYLGTLMEGI
VSVGQDGKLLAANRAALDMLRLSGAALRMNTVTGLFGVSLGALVDHFGSTLSTPLELSLPDGRQIHANARFNGTGWHQLG
RARDDQPEALAHEAAREPAARDALPDTAREPTAHPNAVPPSPSLRQLQTGDARMDDVVTRVKRVLDRDIPVLIQGETGTG
KEMLARAIHQGSRRASGPFIAVNCASIPETLIESELFGYEEGAFTGARRKGAVGKVLQAHGGTLFLDEIGDMPLGLQARL
LRVLQEREVTPLGGTRALPVDVSVISATHQPLRELIDRKQFREDLYYRLNGLVVQLPALRERTDLLALTEKLLKRECRGR
LLRLDAEVLRLMQACRWPGNIRQLATVLRTAVAMAGDDAVITVDHLSEDFLQDARRTLDEEPASVAASRPPVSMAQHAEP
RPSDAAAPDGLGSAQVGEAPGGRSTLHQLEHDTVRRALAEAGGNISVAARRLGISRNTIYRKLYWPPGAGR

Specific function: Unknown

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=357, Percent_Identity=38.655462184874, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI1788550, Length=341, Percent_Identity=39.5894428152493, Blast_Score=215, Evalue=1e-56,
Organism=Escherichia coli, GI87082117, Length=225, Percent_Identity=49.7777777777778, Blast_Score=210, Evalue=2e-55,
Organism=Escherichia coli, GI1788905, Length=333, Percent_Identity=39.039039039039, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1786524, Length=332, Percent_Identity=43.3734939759036, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI1790437, Length=376, Percent_Identity=35.1063829787234, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI1790299, Length=336, Percent_Identity=41.6666666666667, Blast_Score=204, Evalue=1e-53,
Organism=Escherichia coli, GI1789087, Length=225, Percent_Identity=45.7777777777778, Blast_Score=189, Evalue=5e-49,
Organism=Escherichia coli, GI87082152, Length=337, Percent_Identity=36.2017804154303, Blast_Score=183, Evalue=3e-47,
Organism=Escherichia coli, GI87081872, Length=237, Percent_Identity=41.7721518987342, Blast_Score=167, Evalue=3e-42,
Organism=Escherichia coli, GI87081858, Length=685, Percent_Identity=24.963503649635, Blast_Score=165, Evalue=9e-42,
Organism=Escherichia coli, GI1787583, Length=234, Percent_Identity=40.1709401709402, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1789828, Length=275, Percent_Identity=33.8181818181818, Blast_Score=129, Evalue=5e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 77480; Mature: 77349

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASPTATRAAQRDSRRPSGFGHSATSVWLPPDPGHVDTIAQSHERCASLRLSPIRPPDH
CCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
TPLMRSDLAVARERNRCLSLHAVPVMEMLLEQILATQSMVLLTDVQGTVLHSIGHDDFLT
CCHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCHHHHH
RASKVALAPGVNWSESSKGTNAIGTALVTETPTIVHADEHFVHANQFLTCSSSPIFDPRG
HHHHEEECCCCCCCCCCCCCCHHHHHEEECCCEEEECCCCEEECCCEEEECCCCCCCCCC
NLVGVLDVSGDHHSFHVHTMGLVKMSARMIQNHWLIEDSHQTLRLHFHLRRDYLGTLMEG
CEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCEEECCCCEEEEEEEHHHHHHHHHHHH
IVSVGQDGKLLAANRAALDMLRLSGAALRMNTVTGLFGVSLGALVDHFGSTLSTPLELSL
HHHCCCCCCEEECCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
PDGRQIHANARFNGTGWHQLGRARDDQPEALAHEAAREPAARDALPDTAREPTAHPNAVP
CCCCEEEECCEECCCCHHHHCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCC
PSPSLRQLQTGDARMDDVVTRVKRVLDRDIPVLIQGETGTGKEMLARAIHQGSRRASGPF
CCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCE
IAVNCASIPETLIESELFGYEEGAFTGARRKGAVGKVLQAHGGTLFLDEIGDMPLGLQAR
EEEECCHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHCCCEEEEHHHCCCCCCHHHH
LLRVLQEREVTPLGGTRALPVDVSVISATHQPLRELIDRKQFREDLYYRLNGLVVQLPAL
HHHHHHHCCCCCCCCCEECEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCH
RERTDLLALTEKLLKRECRGRLLRLDAEVLRLMQACRWPGNIRQLATVLRTAVAMAGDDA
HHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
VITVDHLSEDFLQDARRTLDEEPASVAASRPPVSMAQHAEPRPSDAAAPDGLGSAQVGEA
EEEHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
PGGRSTLHQLEHDTVRRALAEAGGNISVAARRLGISRNTIYRKLYWPPGAGR
CCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCHHHEEEEEECCCCCCC
>Mature Secondary Structure 
TASPTATRAAQRDSRRPSGFGHSATSVWLPPDPGHVDTIAQSHERCASLRLSPIRPPDH
CCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
TPLMRSDLAVARERNRCLSLHAVPVMEMLLEQILATQSMVLLTDVQGTVLHSIGHDDFLT
CCHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCHHHHH
RASKVALAPGVNWSESSKGTNAIGTALVTETPTIVHADEHFVHANQFLTCSSSPIFDPRG
HHHHEEECCCCCCCCCCCCCCHHHHHEEECCCEEEECCCCEEECCCEEEECCCCCCCCCC
NLVGVLDVSGDHHSFHVHTMGLVKMSARMIQNHWLIEDSHQTLRLHFHLRRDYLGTLMEG
CEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCEEECCCCEEEEEEEHHHHHHHHHHHH
IVSVGQDGKLLAANRAALDMLRLSGAALRMNTVTGLFGVSLGALVDHFGSTLSTPLELSL
HHHCCCCCCEEECCHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
PDGRQIHANARFNGTGWHQLGRARDDQPEALAHEAAREPAARDALPDTAREPTAHPNAVP
CCCCEEEECCEECCCCHHHHCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCC
PSPSLRQLQTGDARMDDVVTRVKRVLDRDIPVLIQGETGTGKEMLARAIHQGSRRASGPF
CCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCE
IAVNCASIPETLIESELFGYEEGAFTGARRKGAVGKVLQAHGGTLFLDEIGDMPLGLQAR
EEEECCHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHCCCEEEEHHHCCCCCCHHHH
LLRVLQEREVTPLGGTRALPVDVSVISATHQPLRELIDRKQFREDLYYRLNGLVVQLPAL
HHHHHHHCCCCCCCCCEECEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCH
RERTDLLALTEKLLKRECRGRLLRLDAEVLRLMQACRWPGNIRQLATVLRTAVAMAGDDA
HHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
VITVDHLSEDFLQDARRTLDEEPASVAASRPPVSMAQHAEPRPSDAAAPDGLGSAQVGEA
EEEHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
PGGRSTLHQLEHDTVRRALAEAGGNISVAARRLGISRNTIYRKLYWPPGAGR
CCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCHHHEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA