| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is 124265577
Identifier: 124265577
GI number: 124265577
Start: 418056
End: 419153
Strand: Reverse
Name: 124265577
Synonym: Mpe_A0384
Alternate gene names: NA
Gene position: 419153-418056 (Counterclockwise)
Preceding gene: 124265578
Following gene: 124265574
Centisome position: 10.36
GC content: 69.85
Gene sequence:
>1098_bases GTGGAACAGATTACTGCAAGGCCAATCGTTCGAGTAGGGGTGGATCTGGCCAAGCGCTTGATGCAGGTGCACGCGGTGGA CGCGGTCGGGCGGGTGGTGACGGCGCGCGCGCTGGCACGCGAGAAGTTCCTGCCGTGGTGCGCGCAGTTGCCGCCGGGCT GCGTCGTGGCGATGGAGACCTGTGGCGGTGCGCACCACTGGGCGCGCCGATTGAGGGCCATGGGTCTGGAGTCCCGGCTC GTCGCCGGCCACTTCGTCGGCCCGTACCGCATGGAAGGCCGGCGCGGCAAGAACGACGCCAACGACGCGGCCGCGGTGTG TGAAGCCGCGGGCCGCCCGCACATGCGTTTCGTGCCGACCAAGACCGCCGAGCAGCAAGCCGTGCTGGCCGTGCACCGGC TGCGCGAAGGTGTCAAGGAAGAACGCACCGCGTGCATCAACCGCATCCGCGGGTTGCTCGCCGAGTTCGGCCTGGTCTTC GCGCAACGTCCCGAAGTGCTGCGCACCGAGCTGGCCGACGTCATCGAGGACGCAAGCAACGAGCTGCCGCACCTGGCGCG CGTGGCGCTGCAGCGTGCTCAGCTGCAATGGAGCGAGCTGGAAGGCCACCTCGCCTGGTGCGACGAGCGCATCGCGGCGC ACGTCAAGACGGACGAGCAAGCCAAGACGGCAGCGCAGCTCATGGGGATCGGGCCGGTCACGGCCTCCGCGCTGGCCGCC AGCGTGGGCGAGTTCCGGCAGTTCCGCACCGGCGCGCAGTTCGGCGCCTGGCTCGGGCTGGTGCCGAGCCAGCACTCCAG CGGCGGCAAGACCAGCCTCGGGCGCATCACCAAGCGCGGCGACGACTACCTGCGCACGCTGCTGATTCAAGGGGCGAAGT CGGCGGTGATGACGGCGCACAAGCGACGAGACCGGATCTCGCAGTGGCTGGTTCAGCTCACGGCGCGTGTGGGCTGGCAA AAGGCCGTGGTGGCCATGGCCAACAAGAACGCGCGCATCCTGTGGGCGGTGCTGGCCAGGGGGCGGCGCTTCGACGCCGA TCACGTCTCGGTCAAGCCCGATGGTTGCGCGATGGCTGTCCCGGCCACGGCGGCCTGA
Upstream 100 bases:
>100_bases AGCGAATACGAAGGGACTTCCCACCTTCGGGCCACGGCGTCAAAGCGCCAAGATTGGTGGTGTCGAGTCATCAATCTCAA GCCATTGAAAGGGGAAGTCC
Downstream 100 bases:
>100_bases CCAACGACCCAGGCATCTGACGAAAATCGATCTTCCCGAGGACGTGCGCACGTAGATGCATCCACAGGTCAGACCGGCGG CGGGCTAGCTCGACTAACCC
Product: putative transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 365; Mature: 365
Protein sequence:
>365_residues MEQITARPIVRVGVDLAKRLMQVHAVDAVGRVVTARALAREKFLPWCAQLPPGCVVAMETCGGAHHWARRLRAMGLESRL VAGHFVGPYRMEGRRGKNDANDAAAVCEAAGRPHMRFVPTKTAEQQAVLAVHRLREGVKEERTACINRIRGLLAEFGLVF AQRPEVLRTELADVIEDASNELPHLARVALQRAQLQWSELEGHLAWCDERIAAHVKTDEQAKTAAQLMGIGPVTASALAA SVGEFRQFRTGAQFGAWLGLVPSQHSSGGKTSLGRITKRGDDYLRTLLIQGAKSAVMTAHKRRDRISQWLVQLTARVGWQ KAVVAMANKNARILWAVLARGRRFDADHVSVKPDGCAMAVPATAA
Sequences:
>Translated_365_residues MEQITARPIVRVGVDLAKRLMQVHAVDAVGRVVTARALAREKFLPWCAQLPPGCVVAMETCGGAHHWARRLRAMGLESRL VAGHFVGPYRMEGRRGKNDANDAAAVCEAAGRPHMRFVPTKTAEQQAVLAVHRLREGVKEERTACINRIRGLLAEFGLVF AQRPEVLRTELADVIEDASNELPHLARVALQRAQLQWSELEGHLAWCDERIAAHVKTDEQAKTAAQLMGIGPVTASALAA SVGEFRQFRTGAQFGAWLGLVPSQHSSGGKTSLGRITKRGDDYLRTLLIQGAKSAVMTAHKRRDRISQWLVQLTARVGWQ KAVVAMANKNARILWAVLARGRRFDADHVSVKPDGCAMAVPATAA >Mature_365_residues MEQITARPIVRVGVDLAKRLMQVHAVDAVGRVVTARALAREKFLPWCAQLPPGCVVAMETCGGAHHWARRLRAMGLESRL VAGHFVGPYRMEGRRGKNDANDAAAVCEAAGRPHMRFVPTKTAEQQAVLAVHRLREGVKEERTACINRIRGLLAEFGLVF AQRPEVLRTELADVIEDASNELPHLARVALQRAQLQWSELEGHLAWCDERIAAHVKTDEQAKTAAQLMGIGPVTASALAA SVGEFRQFRTGAQFGAWLGLVPSQHSSGGKTSLGRITKRGDDYLRTLLIQGAKSAVMTAHKRRDRISQWLVQLTARVGWQ KAVVAMANKNARILWAVLARGRRFDADHVSVKPDGCAMAVPATAA
Specific function: Required for the transposition of an insertion element (Potential) [H]
COG id: COG3547
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 20 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003583 - InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 39906; Mature: 39906
Theoretical pI: Translated: 10.86; Mature: 10.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQITARPIVRVGVDLAKRLMQVHAVDAVGRVVTARALAREKFLPWCAQLPPGCVVAMET CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEHH CGGAHHWARRLRAMGLESRLVAGHFVGPYRMEGRRGKNDANDAAAVCEAAGRPHMRFVPT CCCHHHHHHHHHHHCCHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHCCCCCEEECCC KTAEQQAVLAVHRLREGVKEERTACINRIRGLLAEFGLVFAQRPEVLRTELADVIEDASN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC ELPHLARVALQRAQLQWSELEGHLAWCDERIAAHVKTDEQAKTAAQLMGIGPVTASALAA CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHH SVGEFRQFRTGAQFGAWLGLVPSQHSSGGKTSLGRITKRGDDYLRTLLIQGAKSAVMTAH HHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHCHHHHHHHHH KRRDRISQWLVQLTARVGWQKAVVAMANKNARILWAVLARGRRFDADHVSVKPDGCAMAV HHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEEC PATAA CCCCC >Mature Secondary Structure MEQITARPIVRVGVDLAKRLMQVHAVDAVGRVVTARALAREKFLPWCAQLPPGCVVAMET CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEHH CGGAHHWARRLRAMGLESRLVAGHFVGPYRMEGRRGKNDANDAAAVCEAAGRPHMRFVPT CCCHHHHHHHHHHHCCHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHCCCCCEEECCC KTAEQQAVLAVHRLREGVKEERTACINRIRGLLAEFGLVFAQRPEVLRTELADVIEDASN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC ELPHLARVALQRAQLQWSELEGHLAWCDERIAAHVKTDEQAKTAAQLMGIGPVTASALAA CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHH SVGEFRQFRTGAQFGAWLGLVPSQHSSGGKTSLGRITKRGDDYLRTLLIQGAKSAVMTAH HHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHCHHHHHHHHH KRRDRISQWLVQLTARVGWQKAVVAMANKNARILWAVLARGRRFDADHVSVKPDGCAMAV HHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEEC PATAA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]