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The map label for this gene is dgdR [H]

Identifier: 124265561

GI number: 124265561

Start: 406059

End: 406916

Strand: Reverse

Name: dgdR [H]

Synonym: Mpe_A0368

Alternate gene names: 124265561

Gene position: 406916-406059 (Counterclockwise)

Preceding gene: 124265568

Following gene: 124265557

Centisome position: 10.06

GC content: 75.06

Gene sequence:

>858_bases
ATGCTGCTGGACATCGATCAGCTCCGCACGCTGGTGGCGTTTGCCGACGCCGGCAGCTGCAAGGGCGCGGCCCACCTGGT
GCACAAGACGCCCTCGGCGGTGAGCGTGCACCTGGCCAAGCTGGCGGCCTCGCTGGAGCGGCCGCTGCTGGAGCGCCAGG
GCCGGCGCCTGGTGCTCACGCACGACGGCACCGAGCTCGTGCGCTACGCGCGGCGCATGCTGGCGCTGCAGAGCGAGGCG
CTGGCGCACTTCCGCGCGCCCGAGTTCGGCGGCACGCTGCGCGTGGGCCTGCCCGACGACTACATCCCGGTGCTGATGGC
GCCGCTGCTGGCGGCGCTGGCGCGGCTGGCGCCGCGCGCTCACGTGGAGGTGCAGTGCGCGCCCAGCGCCGAGCTGCGCC
CGCTGCTGGCCGACGGCCAGCTCGACCTGGCCATCCTGTCGGCCGAGACCGACACCCAGGAGGGCGTGGTGCTGCGCACC
GAGCGCGTGGTGTGGACGGCCTCGGCCCAGCACGACGTGGCGCACGCCGACTGCCTGCCGCTGGCGCTGTTCCCGGAGGG
CTGCATCTTCCGCAAGTGGGCGCTGGCGCAGCTGCGCAAGCGGCGGCGCGAGCACCGCATCGTCTGCACCAGCCGCAGCA
TGGCGGCGGTGCAGGCGGCGGTGCGCACCGGCTTCGCGGTGTCGGTGGTGGCCGAGAGCTGCGTGCCGCCCGATGCGGTG
GTGCTCACGCCGCAGCAGGGCTTTCCGGCGCTGCCGGCGGTGACGATCATCCTGGCCGCCTCGCCGGCCACCGACGCGGC
GCTGGCGCAGCGTCTGGGGGAGCAGATGCGGGGGCCGTTGAGGCGGGTGAGGGGCTAG

Upstream 100 bases:

>100_bases
GGAAAACGGGAACGTCAGCGTTTCACTCTAGGCGGATCGAAAGCCGCTGAAAAACGAAACTTCATGGCGCGACAGTTCAC
GTTTCGTAAACTCAGCGCCC

Downstream 100 bases:

>100_bases
CGCGTCAGAGCAGCAGGAAGGCGGCGGCAGCCACCAGCGTGGGGCCCAGAGCGCCGAGCAGCAGGCCGCCGGCGCCGACC
GATTCGTCGGCGAAGCCGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MLLDIDQLRTLVAFADAGSCKGAAHLVHKTPSAVSVHLAKLAASLERPLLERQGRRLVLTHDGTELVRYARRMLALQSEA
LAHFRAPEFGGTLRVGLPDDYIPVLMAPLLAALARLAPRAHVEVQCAPSAELRPLLADGQLDLAILSAETDTQEGVVLRT
ERVVWTASAQHDVAHADCLPLALFPEGCIFRKWALAQLRKRRREHRIVCTSRSMAAVQAAVRTGFAVSVVAESCVPPDAV
VLTPQQGFPALPAVTIILAASPATDAALAQRLGEQMRGPLRRVRG

Sequences:

>Translated_285_residues
MLLDIDQLRTLVAFADAGSCKGAAHLVHKTPSAVSVHLAKLAASLERPLLERQGRRLVLTHDGTELVRYARRMLALQSEA
LAHFRAPEFGGTLRVGLPDDYIPVLMAPLLAALARLAPRAHVEVQCAPSAELRPLLADGQLDLAILSAETDTQEGVVLRT
ERVVWTASAQHDVAHADCLPLALFPEGCIFRKWALAQLRKRRREHRIVCTSRSMAAVQAAVRTGFAVSVVAESCVPPDAV
VLTPQQGFPALPAVTIILAASPATDAALAQRLGEQMRGPLRRVRG
>Mature_285_residues
MLLDIDQLRTLVAFADAGSCKGAAHLVHKTPSAVSVHLAKLAASLERPLLERQGRRLVLTHDGTELVRYARRMLALQSEA
LAHFRAPEFGGTLRVGLPDDYIPVLMAPLLAALARLAPRAHVEVQCAPSAELRPLLADGQLDLAILSAETDTQEGVVLRT
ERVVWTASAQHDVAHADCLPLALFPEGCIFRKWALAQLRKRRREHRIVCTSRSMAAVQAAVRTGFAVSVVAESCVPPDAV
VLTPQQGFPALPAVTIILAASPATDAALAQRLGEQMRGPLRRVRG

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=276, Percent_Identity=29.3478260869565, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI1787806, Length=196, Percent_Identity=27.0408163265306, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30741; Mature: 30741

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLDIDQLRTLVAFADAGSCKGAAHLVHKTPSAVSVHLAKLAASLERPLLERQGRRLVLT
CCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
HDGTELVRYARRMLALQSEALAHFRAPEFGGTLRVGLPDDYIPVLMAPLLAALARLAPRA
ECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC
HVEVQCAPSAELRPLLADGQLDLAILSAETDTQEGVVLRTERVVWTASAQHDVAHADCLP
CEEEEECCCCCCCEEEECCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCE
LALFPEGCIFRKWALAQLRKRRREHRIVCTSRSMAAVQAAVRTGFAVSVVAESCVPPDAV
EEECCCCHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHCCHHHHHHHHHCCCCCEE
VLTPQQGFPALPAVTIILAASPATDAALAQRLGEQMRGPLRRVRG
EECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLDIDQLRTLVAFADAGSCKGAAHLVHKTPSAVSVHLAKLAASLERPLLERQGRRLVLT
CCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
HDGTELVRYARRMLALQSEALAHFRAPEFGGTLRVGLPDDYIPVLMAPLLAALARLAPRA
ECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCC
HVEVQCAPSAELRPLLADGQLDLAILSAETDTQEGVVLRTERVVWTASAQHDVAHADCLP
CEEEEECCCCCCCEEEECCCEEEEEEECCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCE
LALFPEGCIFRKWALAQLRKRRREHRIVCTSRSMAAVQAAVRTGFAVSVVAESCVPPDAV
EEECCCCHHHHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHCCHHHHHHHHHCCCCCEE
VLTPQQGFPALPAVTIILAASPATDAALAQRLGEQMRGPLRRVRG
EECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]