| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is pepP [H]
Identifier: 124265447
GI number: 124265447
Start: 275036
End: 276400
Strand: Reverse
Name: pepP [H]
Synonym: Mpe_A0254
Alternate gene names: 124265447
Gene position: 276400-275036 (Counterclockwise)
Preceding gene: 124265449
Following gene: 124265445
Centisome position: 6.83
GC content: 72.67
Gene sequence:
>1365_bases ATGAGCCCCTCCGTCTATGCCGAGCGCCGCGCACGCCTGAGCACCGCGCTGCGCGAGGCCGGTGGCGGCATCGCCGTGCT GCCGACCGCGCCGGAGCGCACCCGCAACGCCGACAGCGAACACCCTTATCGCCACGACAGCGCGTTCTACTACCTGACCG GGTTCTCCGAGCCGGGCGCGCTGCTCGTCCTCGACGCCGCCGGTCGCAGCCTGCTGCTGTGCCGCCCGAAGGACGAGGAA CGCGAGATCTGGGACGGCTACCGGCTCGGCCCCGAATCGGCGCCCGCCGCGCTGGGCATCGACGAGGCGATGCCGATCGA GGCGCTGGACACGGTGTTGCCGCAGCGGCTCGCCAACTGCCCGGCGGTGTGGTTCCCGTTCGGCGGACACGACGGGCTCG CGTCGCGCGTCGCCGGCTGGCTGGACAACGTGCGTGCGCGTTCACGCGCCGGCATCGAGTCGCCGACGCAGCAGCGCGAC CTGGCTCGGTTGATCGACGAAATGCGCCTGTTCAAGGACCCGCACGAGGTGGCGCTGATGCGCCGCGCCGGCGAAATCGG CGCGGCCGGGCATGTGCGCGCCATGCAGGCCTGCCGGCCCGGCCTGCGTGAGTACCAGCTCGAGGCCGAACTGCTGCACG AGTTCCGCCGCAGTGGCGCCAGCGGCCCGGCCTACACGAGCATCGTCGCCGCGGGCCGCAACGCCTGCGTGCTGCACTAC GCTGCCGGCGACGCTGAGCTGCGGCCCGGCGAGCTGTGCCTGATCGACGCCGGCTGCGAATACGGCAGCTATGCGAGCGA CATCACGCGCAGCTTTCCGGTCGACGGCCGCTACACGGCGCCGCAACGTGCGCTCTATGAACTGGTGCTGGCCGCCCAGG AGGCCGCGATCGCCCACACCCGGCCCGGCGCCCGCAAGACCGACAGCCACTGGGCTGCGGTGCGCGCGCTGAGCGTCGGC CTGCTGGACCTGGGTCTGCTCGACCGCGACCGGCACGGCACGGTCGACGACGTGGTGGCCAGCGCCGCCTACAGGCGCTT CTACATGCACGGCACCGGCCACTGGCTGGGGCTGGACGTGCATGATGCCGGCGAGTACCTCGCCCTCGACGAGGCGCCGA TCGAGCAGCCCGACGGGCTCGGCGGCCTCACCATCAAGAAGCCCTCGCGCCGTCTGCAGCCGGGCATGGTGGTCACGATC GAGCCCGGGCTCTACGTGCGGCCGGCCCCCGACGTGCCGGAGTGCTACTGGCACCTCGGCATCCGCATCGAGGACGACGC GCTCGTCACGCCCGACGGCTGCGAGCTGCTGAGCCGGGGCGTGCCGGTGCGGCCCGACGAGATCGAGGCGCTGATGCGCG GCTGA
Upstream 100 bases:
>100_bases GAGGGACTCCTGGTCTTCGATGATCGGTACCGCGCGCGGCGGGCACCTTGCCCCTGCCGCGCTCACTACACTGCAAGCGT ACCCAGAACCGCATCGCCCC
Downstream 100 bases:
>100_bases GTGCCGCGCGCCGCGCCGGGGGCTATTGCAGTTGCCCGGGTGCGCGGTGCCACAGCCGCTGGGCGGCTTCGGCCGGATCG ACACCGACGGCATCCGCGAC
Product: putative Xaa-Pro aminopeptidase (aminopeptidase P II) protein
Products: NA
Alternate protein names: Aminoacylproline aminopeptidase; Aminopeptidase P II; APP-II; X-Pro aminopeptidase [H]
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MSPSVYAERRARLSTALREAGGGIAVLPTAPERTRNADSEHPYRHDSAFYYLTGFSEPGALLVLDAAGRSLLLCRPKDEE REIWDGYRLGPESAPAALGIDEAMPIEALDTVLPQRLANCPAVWFPFGGHDGLASRVAGWLDNVRARSRAGIESPTQQRD LARLIDEMRLFKDPHEVALMRRAGEIGAAGHVRAMQACRPGLREYQLEAELLHEFRRSGASGPAYTSIVAAGRNACVLHY AAGDAELRPGELCLIDAGCEYGSYASDITRSFPVDGRYTAPQRALYELVLAAQEAAIAHTRPGARKTDSHWAAVRALSVG LLDLGLLDRDRHGTVDDVVASAAYRRFYMHGTGHWLGLDVHDAGEYLALDEAPIEQPDGLGGLTIKKPSRRLQPGMVVTI EPGLYVRPAPDVPECYWHLGIRIEDDALVTPDGCELLSRGVPVRPDEIEALMRG
Sequences:
>Translated_454_residues MSPSVYAERRARLSTALREAGGGIAVLPTAPERTRNADSEHPYRHDSAFYYLTGFSEPGALLVLDAAGRSLLLCRPKDEE REIWDGYRLGPESAPAALGIDEAMPIEALDTVLPQRLANCPAVWFPFGGHDGLASRVAGWLDNVRARSRAGIESPTQQRD LARLIDEMRLFKDPHEVALMRRAGEIGAAGHVRAMQACRPGLREYQLEAELLHEFRRSGASGPAYTSIVAAGRNACVLHY AAGDAELRPGELCLIDAGCEYGSYASDITRSFPVDGRYTAPQRALYELVLAAQEAAIAHTRPGARKTDSHWAAVRALSVG LLDLGLLDRDRHGTVDDVVASAAYRRFYMHGTGHWLGLDVHDAGEYLALDEAPIEQPDGLGGLTIKKPSRRLQPGMVVTI EPGLYVRPAPDVPECYWHLGIRIEDDALVTPDGCELLSRGVPVRPDEIEALMRG >Mature_453_residues SPSVYAERRARLSTALREAGGGIAVLPTAPERTRNADSEHPYRHDSAFYYLTGFSEPGALLVLDAAGRSLLLCRPKDEER EIWDGYRLGPESAPAALGIDEAMPIEALDTVLPQRLANCPAVWFPFGGHDGLASRVAGWLDNVRARSRAGIESPTQQRDL ARLIDEMRLFKDPHEVALMRRAGEIGAAGHVRAMQACRPGLREYQLEAELLHEFRRSGASGPAYTSIVAAGRNACVLHYA AGDAELRPGELCLIDAGCEYGSYASDITRSFPVDGRYTAPQRALYELVLAAQEAAIAHTRPGARKTDSHWAAVRALSVGL LDLGLLDRDRHGTVDDVVASAAYRRFYMHGTGHWLGLDVHDAGEYLALDEAPIEQPDGLGGLTIKKPSRRLQPGMVVTIE PGLYVRPAPDVPECYWHLGIRIEDDALVTPDGCELLSRGVPVRPDEIEALMRG
Specific function: Unknown
COG id: COG0006
COG function: function code E; Xaa-Pro aminopeptidase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M24B family [H]
Homologues:
Organism=Homo sapiens, GI11559925, Length=467, Percent_Identity=32.9764453961456, Blast_Score=240, Evalue=2e-63, Organism=Homo sapiens, GI149589008, Length=480, Percent_Identity=33.125, Blast_Score=204, Evalue=2e-52, Organism=Homo sapiens, GI260593665, Length=312, Percent_Identity=38.1410256410256, Blast_Score=179, Evalue=5e-45, Organism=Homo sapiens, GI260593663, Length=291, Percent_Identity=36.426116838488, Blast_Score=150, Evalue=2e-36, Organism=Escherichia coli, GI1789275, Length=456, Percent_Identity=44.2982456140351, Blast_Score=381, Evalue=1e-107, Organism=Escherichia coli, GI1788728, Length=276, Percent_Identity=32.2463768115942, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1790282, Length=324, Percent_Identity=29.6296296296296, Blast_Score=106, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17508215, Length=479, Percent_Identity=32.5678496868476, Blast_Score=192, Evalue=2e-49, Organism=Caenorhabditis elegans, GI71989583, Length=374, Percent_Identity=28.8770053475936, Blast_Score=127, Evalue=2e-29, Organism=Saccharomyces cerevisiae, GI6321118, Length=465, Percent_Identity=31.6129032258064, Blast_Score=194, Evalue=3e-50, Organism=Saccharomyces cerevisiae, GI6320922, Length=465, Percent_Identity=28.3870967741935, Blast_Score=179, Evalue=1e-45, Organism=Drosophila melanogaster, GI19920384, Length=472, Percent_Identity=34.9576271186441, Blast_Score=222, Evalue=3e-58, Organism=Drosophila melanogaster, GI21357079, Length=445, Percent_Identity=30.7865168539326, Blast_Score=182, Evalue=5e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001714 - InterPro: IPR000994 - InterPro: IPR007865 - InterPro: IPR001131 [H]
Pfam domain/function: PF05195 AMP_N; PF00557 Peptidase_M24 [H]
EC number: =3.4.11.9 [H]
Molecular weight: Translated: 49524; Mature: 49392
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: PS00491 PROLINE_PEPTIDASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPSVYAERRARLSTALREAGGGIAVLPTAPERTRNADSEHPYRHDSAFYYLTGFSEPGA CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCC LLVLDAAGRSLLLCRPKDEEREIWDGYRLGPESAPAALGIDEAMPIEALDTVLPQRLANC EEEEECCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC PAVWFPFGGHDGLASRVAGWLDNVRARSRAGIESPTQQRDLARLIDEMRLFKDPHEVALM CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH RRAGEIGAAGHVRAMQACRPGLREYQLEAELLHEFRRSGASGPAYTSIVAAGRNACVLHY HHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEEE AAGDAELRPGELCLIDAGCEYGSYASDITRSFPVDGRYTAPQRALYELVLAAQEAAIAHT ECCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC RPGARKTDSHWAAVRALSVGLLDLGLLDRDRHGTVDDVVASAAYRRFYMHGTGHWLGLDV CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEECCCCCEEEEEE HDAGEYLALDEAPIEQPDGLGGLTIKKPSRRLQPGMVVTIEPGLYVRPAPDVPECYWHLG ECCCCEEEECCCCCCCCCCCCCEEECCCHHHCCCCEEEEECCCEEECCCCCCCHHHEEEC IRIEDDALVTPDGCELLSRGVPVRPDEIEALMRG EEECCCCEECCCHHHHHHCCCCCCHHHHHHHHCC >Mature Secondary Structure SPSVYAERRARLSTALREAGGGIAVLPTAPERTRNADSEHPYRHDSAFYYLTGFSEPGA CCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHCCCCCCCCCCCCCEEEEEEECCCCCC LLVLDAAGRSLLLCRPKDEEREIWDGYRLGPESAPAALGIDEAMPIEALDTVLPQRLANC EEEEECCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC PAVWFPFGGHDGLASRVAGWLDNVRARSRAGIESPTQQRDLARLIDEMRLFKDPHEVALM CEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH RRAGEIGAAGHVRAMQACRPGLREYQLEAELLHEFRRSGASGPAYTSIVAAGRNACVLHY HHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEEEE AAGDAELRPGELCLIDAGCEYGSYASDITRSFPVDGRYTAPQRALYELVLAAQEAAIAHT ECCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC RPGARKTDSHWAAVRALSVGLLDLGLLDRDRHGTVDDVVASAAYRRFYMHGTGHWLGLDV CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEECCCCCEEEEEE HDAGEYLALDEAPIEQPDGLGGLTIKKPSRRLQPGMVVTIEPGLYVRPAPDVPECYWHLG ECCCCEEEECCCCCCCCCCCCCEEECCCHHHCCCCEEEEECCCEEECCCCCCCHHHEEEC IRIEDDALVTPDGCELLSRGVPVRPDEIEALMRG EEECCCCEECCCHHHHHHCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2659585; 1339425; 9278503; 9520390 [H]