| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is yidB [H]
Identifier: 124265392
GI number: 124265392
Start: 213943
End: 214359
Strand: Reverse
Name: yidB [H]
Synonym: Mpe_A0199
Alternate gene names: 124265392
Gene position: 214359-213943 (Counterclockwise)
Preceding gene: 124265393
Following gene: 124265376
Centisome position: 5.3
GC content: 70.98
Gene sequence:
>417_bases ATGGGTTTGCTGGACTCGGTGATCGGAGCCCTGGGCGGCTCTCAGGCGAACGGGCAAGGCGACGCGCTGCAGGCGGTGAT CGCGATGCTGGCGCGCGGTGGACAGGGAGGCGGCGGGCTCGAGGGCCTGGTGCAGCAGTTCCAGCAGGGCGGCCTGGGCG ACCTGATCGCCTCGTGGGTCGGCACTGGCCAGAACCTGCCGGTGTCCGCCAGCCAGCTGCAGGACGTGCTGGGCAGCGAC ATGCTGTCGCAGTTCGCCCAGCAGCTTGGCCTGCCTCCGGGGGAGGCGGCCGGTCAACTGTCGCAGCTGCTGCCGCAGGT GGTGGACAAGCTCACGCCCAATGGCCAGCTGTCCGACATCGGCAGCTCCGGGCTGGGCGACCTGGGCAGCGTGCTGGAGC GGTTCAGCCGGCCCTGA
Upstream 100 bases:
>100_bases TGAGCCCGCGCGGGCACCGTACGCTGCCGAGGGACTCTGCGCCGCCGCTCGCCTGCGAGCCTCACAATCGGCGCGGGGAC GGTCCCCGCGGGAGCACGTG
Downstream 100 bases:
>100_bases AGAAACGACAAGGCCCGCACGCGGCGGGCCTGGTGTCGTGTGCGGACCGACGGCGAAACAGCCCGCCGCCCCGACCTCCG CGCCTTACTTCTTGCGGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 138; Mature: 137
Protein sequence:
>138_residues MGLLDSVIGALGGSQANGQGDALQAVIAMLARGGQGGGGLEGLVQQFQQGGLGDLIASWVGTGQNLPVSASQLQDVLGSD MLSQFAQQLGLPPGEAAGQLSQLLPQVVDKLTPNGQLSDIGSSGLGDLGSVLERFSRP
Sequences:
>Translated_138_residues MGLLDSVIGALGGSQANGQGDALQAVIAMLARGGQGGGGLEGLVQQFQQGGLGDLIASWVGTGQNLPVSASQLQDVLGSD MLSQFAQQLGLPPGEAAGQLSQLLPQVVDKLTPNGQLSDIGSSGLGDLGSVLERFSRP >Mature_137_residues GLLDSVIGALGGSQANGQGDALQAVIAMLARGGQGGGGLEGLVQQFQQGGLGDLIASWVGTGQNLPVSASQLQDVLGSDM LSQFAQQLGLPPGEAAGQLSQLLPQVVDKLTPNGQLSDIGSSGLGDLGSVLERFSRP
Specific function: Unknown
COG id: COG3753
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082321, Length=119, Percent_Identity=33.6134453781513, Blast_Score=67, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009282 [H]
Pfam domain/function: PF06078 DUF937 [H]
EC number: NA
Molecular weight: Translated: 13780; Mature: 13649
Theoretical pI: Translated: 3.78; Mature: 3.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLLDSVIGALGGSQANGQGDALQAVIAMLARGGQGGGGLEGLVQQFQQGGLGDLIASWV CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHH GTGQNLPVSASQLQDVLGSDMLSQFAQQLGLPPGEAAGQLSQLLPQVVDKLTPNGQLSDI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHC GSSGLGDLGSVLERFSRP CCCCCCHHHHHHHHHCCC >Mature Secondary Structure GLLDSVIGALGGSQANGQGDALQAVIAMLARGGQGGGGLEGLVQQFQQGGLGDLIASWV CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHH GTGQNLPVSASQLQDVLGSDMLSQFAQQLGLPPGEAAGQLSQLLPQVVDKLTPNGQLSDI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHC GSSGLGDLGSVLERFSRP CCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3029692; 7686882; 9278503 [H]