Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

Click here to switch to the map view.

The map label for this gene is 124265368

Identifier: 124265368

GI number: 124265368

Start: 190001

End: 190624

Strand: Reverse

Name: 124265368

Synonym: Mpe_A0175

Alternate gene names: NA

Gene position: 190624-190001 (Counterclockwise)

Preceding gene: 124265375

Following gene: 124265363

Centisome position: 4.71

GC content: 68.59

Gene sequence:

>624_bases
ATGACCCGCGCCGCCGCCCCCCGAGTCGACAAGTTCGCCGAGCGCCGTGCCGAGCTCGGCGCGGCTGCGCTGCAGGCCCT
GGCCGAACTGGGCTATGCGCGCACCAGCCTGCGCGAGATCGCGCAGAAGTCCGAGTTCTCGCACGGCGTGCTGCACTACT
ACTTCAAGGACAAGCTCGACCTGATCCTGTGCAGCATGCGCCAGTACAAGGCGCGCTGCGTCGTGCGCTACGACCAGGTG
ACGGCGGAGGCCACCAGCTTCGACGAGCTGATGACGGGCTTCCTGGCCGTCCTCGGCGAGACGGTGCGCCGCGAGGCGCC
GCTGCACCGCCTGTGGTACGACCTGCGCGCGCAATCGCTGTTCGACGAGGGCTTTCGCACCGACGTGGCAGAGATCGACA
AGAGCCTCGAGAAGATGATGTGGCGCGTGATGTCGCGCTTCGCCGAACTGGCCGGCGAGCCGCTGCGCCTGCCGGCCAGC
GTGATCTACGCGACCTTCGACGGCCTGTTCCAGCAGTGCCTGCTGAAGCACCTGTCGGGCGACCGGCAGGCGATCTCGGC
GCTGCAGAAGAACGTGCGGCTGGTGGTGGTGCAGCTGGTCGGCGCGCCGACGCGGCTGCAGTAA

Upstream 100 bases:

>100_bases
GTATTTTTTGGACAGTCGTCCAGATTCTCCGCGCCGCAGACTGGCCAGGGCCTGCGCTGTGCTATCTTGAGCAGCATCCG
CGACCGTTCCGTACCGATCC

Downstream 100 bases:

>100_bases
CGCGGCCCGCTCAGATCTCGACCTTCGAGCCCAGCTCCACGACGCGGTTGGTCGGCAGGTTCAGGAAGTCAGCCGCCGCC
GCCGCGTTGCGGTGCATGCT

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MTRAAAPRVDKFAERRAELGAAALQALAELGYARTSLREIAQKSEFSHGVLHYYFKDKLDLILCSMRQYKARCVVRYDQV
TAEATSFDELMTGFLAVLGETVRREAPLHRLWYDLRAQSLFDEGFRTDVAEIDKSLEKMMWRVMSRFAELAGEPLRLPAS
VIYATFDGLFQQCLLKHLSGDRQAISALQKNVRLVVVQLVGAPTRLQ

Sequences:

>Translated_207_residues
MTRAAAPRVDKFAERRAELGAAALQALAELGYARTSLREIAQKSEFSHGVLHYYFKDKLDLILCSMRQYKARCVVRYDQV
TAEATSFDELMTGFLAVLGETVRREAPLHRLWYDLRAQSLFDEGFRTDVAEIDKSLEKMMWRVMSRFAELAGEPLRLPAS
VIYATFDGLFQQCLLKHLSGDRQAISALQKNVRLVVVQLVGAPTRLQ
>Mature_206_residues
TRAAAPRVDKFAERRAELGAAALQALAELGYARTSLREIAQKSEFSHGVLHYYFKDKLDLILCSMRQYKARCVVRYDQVT
AEATSFDELMTGFLAVLGETVRREAPLHRLWYDLRAQSLFDEGFRTDVAEIDKSLEKMMWRVMSRFAELAGEPLRLPASV
IYATFDGLFQQCLLKHLSGDRQAISALQKNVRLVVVQLVGAPTRLQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23518; Mature: 23386

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRAAAPRVDKFAERRAELGAAALQALAELGYARTSLREIAQKSEFSHGVLHYYFKDKLD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LILCSMRQYKARCVVRYDQVTAEATSFDELMTGFLAVLGETVRREAPLHRLWYDLRAQSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
FDEGFRTDVAEIDKSLEKMMWRVMSRFAELAGEPLRLPASVIYATFDGLFQQCLLKHLSG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
DRQAISALQKNVRLVVVQLVGAPTRLQ
CHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TRAAAPRVDKFAERRAELGAAALQALAELGYARTSLREIAQKSEFSHGVLHYYFKDKLD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LILCSMRQYKARCVVRYDQVTAEATSFDELMTGFLAVLGETVRREAPLHRLWYDLRAQSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
FDEGFRTDVAEIDKSLEKMMWRVMSRFAELAGEPLRLPASVIYATFDGLFQQCLLKHLSG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
DRQAISALQKNVRLVVVQLVGAPTRLQ
CHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA